Cumulus Support

Hello All, Cumulus version 4.0.2 is released. The release notes can be viewed at https://github.com/

Hello All, Cumulus version 4.0.1 is released. The release notes can be viewed at https://github.com/

Hello All, Cumulus version 4.0.0 is released. The release notes can be viewed at https://github.com/

Hi Yiming, Thank you for your reply! Yes, we can use both of them in spaceranger v.4.0, which is one

Hello All, Cumulus version 3.1.1 is released. The release notes can be viewed at https://github.com/

Hello All, Cumulus version 3.1.0 is released. The release notes can be viewed at https://github.com/

Hi Laura, This error usually indicates that the generated count matrix does not capture any valid

Hello Laura, May I know which workflow version you are using? From your issue with "--create-bam

Hello All, Cumulus version 3.0.0 is released. The release notes can be viewed at https://github.com/

Hello Adam, Sorry for this inconvenience. The issue is because the mkfastq step uses an internal

Hi Laura, You can increase the disk space for your adt job by specifying "feature_disk_space

Hello Francesco, It seems this cellranger annotate feature requires having Cloud token from 10x cloud

Just include Deeptha from Broad into this email thread. Hi Deeptha, As you can read from the quoted

Hello All, Cumulus version 2.6.3 is released. This is a small bug-fix release. The release notes can

Hi Yiming thank you so much for your support!! Now it is working, I will let you know if I have other

Hi Andrew, It looks like this GitHub issue is yours: https://github.com/lilab-bcb/cumulus/issues/406.

Hello All, Cumulus version 2.6.2 is released. The release notes can be viewed at https://github.com/

Hello All, Pegasus version 1.10.0 is released, along with PegasusIO version 0.9.1. The new features

Hello All, Cumulus version 2.6.1 is released. The release notes can be viewed at https://github.com/

Hi Yiming, Thanks for your quick response. I tried the workflow for count with the default Cellranger

Hello All, Cumulus version 2.6.0 is released. The release notes can be viewed at https://github.com/

Thank you for your help Yiming! It works now. Best, Ansel On Tue, Apr 9, 2024 at 5:26 PM Yiming Yang

Hello, I am running into issues when trying to use STARsolo imported to Terra via Dockstore. It seems

Hello, Just a Demuxlet update: still running with one pool of 2 samples (running time 22h), and still

Hello All, Cumulus version 2.5.0 is released. The release notes can be viewed at https://github.com/

Hi David, Hope this email finds you well. The issue on missing stratocumulus package has been fixed

Hello All, Pegasus version 1.9.0 is released, along with PegasusIO version 0.9.0. The new features

Hello all, I just discovered Pegasus and am now wondering, what the difference to an AnnData object

Hi all, Very new to terra and cellranger, so I will try to provide as much information as possible. I

Hello Alyssa, Thanks for reaching! May I know the version of Cumulus cellranger workflow that you