Hi Ryan,
There is no way to resample within ctmm. Assuming that the projections are the same, then you would have export the PDF rasters, resample them, and then assign their arrays back to the UD object and update the dr slot.
If the projections are different, then you would also have to re-project the fit objects that are stored inside the UD objects, which I also have not coded. That would involve some math (shift, rotation, and rescaling).
Best,
Chris