Hi all,
Chris, I was first introduced to your package at the TWS conference last year. I am excited to try to implement it on my data!
I am working on collared ungulates that show highly annual migratory behaviour. We were hoping to fit ADKE for the different seasons (i.e., winter, summer, calving).
My data are not reaching an asymptote, or they appear to reach one, but the model has a very poor DOF. I have filtered the data to these seasonal dates, looking closely at an NSD plot to find periods where they are not moving much, indicating each season they are in.
Below is an example of what I am working with. We can see, based on the NSD, that this individual is not moving around much and looks like they would be in winter residency. The dotted lines show where I cut the data (essentially Jan 1 to March 31)
The plot seems to show they are moving around this area and not drifting
plot(tel_winter_list[[2]], col=rainbow(length(tel_winter_list[[2]])))
This is the resulting variogram, which looks like a weak asymptote
plot(variogram(tel_winter_list[[2]]))
But atlas, the DOF is 3.39.
guess <- ctmm.guess(tel_winter_list[[2]], interactive = FALSE)
winter_fit <- ctmm.select(tel_winter_list[[2]], guess)
$name
[1] "OUF anisotropic"
$DOF
mean area diffusion speed
3.393894 3.931521 294.348787 107.354005
$CI
low est high
area (square kilometers) 86.471551 322.135496 709.909469
τ[position] (days) 4.953645 18.736642 70.869389
τ[velocity] (minutes) 32.367775 42.999965 57.124623
speed (kilometers/day) 7.108179 7.850595 8.592105
diffusion (square kilometers/day) 1.615627 1.817330 2.030725
Is there anything I can be doing better here to improve this? Is it still ok to use this model for an ADKE with the caution that these are largely underestimated, or would an ADKE with such poor DOF be unusable? I have tried bootstrapping, but as the data is being split per individual, per year, per season, the pure volume of ADKEs needed makes bootstrapping computationally impossible.
Ultimately, I want to make sure my use of this model in an ADKE would be acceptable to look at space use during these seasons, even with a low DOF. I plan on pooling all adkes per season per individual using pdke, and then combining all individuals eventually using pdke as well to get population-level space use.
Absolutely any advice or insight would be greatly appreciated. Thank you!