Particles missing form final data.star file

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Rick Baker

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Apr 25, 2018, 12:21:21 PM4/25/18
to Cryo-EM in the cloud
Hi Mike,

I notice periodically that the final data.star file from a 2D classification is missing a lot of particles. (See below). I haven't seen it in a while, but I used the AWS tools this morning and it came back. I'm wondering if this is at all related to the cloud tools. Have you ever seen this?

Rick

[rick@aida job005]$ wc -l *data.star

    224615 run_it000_data.star

    224618 run_it001_data.star

    224618 run_it001_sub_data.star

    224618 run_it002_data.star

    224618 run_it003_data.star

    224618 run_it004_data.star

    224618 run_it005_data.star

    224618 run_it006_data.star

    224618 run_it007_data.star

    224618 run_it008_data.star

    224618 run_it009_data.star

    224618 run_it010_data.star

    224618 run_it011_data.star

    224618 run_it012_data.star

    224618 run_it013_data.star

    224618 run_it014_data.star

    224618 run_it015_data.star

    224618 run_it016_data.star

    224618 run_it017_data.star

    224618 run_it018_data.star

    224618 run_it019_data.star

    224618 run_it020_data.star

    224618 run_it021_data.star

    224618 run_it022_data.star

    224618 run_it023_data.star

    224618 run_it024_data.star

     98379 run_it025_data.star

   5938444 total

mcia...@umich.edu

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Apr 25, 2018, 8:02:04 PM4/25/18
to Cryo-EM in the cloud
Hi Rick,

I haven't noticed this before - is it always the last iteration? 
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