Updated Param-Medic to enable inference of the presence
of various types of modifications, including stable-isotope and isobaric
labeling and tandem mass tags as well as the enrichment of phosphorylated
peptides. The methodology is described inMay et al. Journal of Proteome Research, 2019.
Updated Crux to use Comet
Removed the following Crux commands: search-for-xlinks,
xlink-assign-ions, xlink-score-spectrum, barista, q-ranker,
extract-columns, extract-rows, stat-column, sort-by-column.
number of minor enhancements and fixes are also included, as listed in
the release notes. Source code as well as binaries for Linux, MacOS and
Windows are available from the Crux web page: