Rich,
Sorry don't have a schematic for 4FDC but the obvious two suggestions are: faulty drive or faulty 4FDC. If you have a 'scope look at the -STEP line and see if it is regular pulses. If the drive is not following the stepping pulses properly then it's the drive. Otherwise, it is probably bad chip leg contacts on the FDC. PITA. Take out each chip in turn, carefully clean its legs with a pencil eraser and reinsert without bending the legs. Takes ages but Cromemco left us this great pastime to fill our twilight years!
If all else fails I could test/fix it but am in the UK (and I guess you are in the States) so another PITA. :-)
Mike