Why not, I think that's the best way to do it. We normally do puro selection. If you use puro selection, I recommend you to transfect higher amount of px461 compared to px462. I used to co-transfect 2 CRISPR plasmid (one in PX459puro, another one in px330 or px458) to cells with a very high efficiency in getting clones hit by both CRISPR.
The reason I put one CRISPR in PX459-Puro and another one in Cas9-GFP/Cas9-only is because we wanna make sure both plasmids enter the cells. I will give you an example, if we put both plasmid in PX459-Puro (let's say A & B), after puro selection the surviving clones must contain PX459-puro, but the surviving clones might contain only A or only B, and could be both.
However if we put CRSIPR A in PX459-puro, and CRISPR B in PX458-GFP/PX330 with ratio A:B=1:2 or even 1:3, after the puro selection the surviving cells must contain PX459-puro CRISPR A, and because CRISPR B in PX458-GFP/PX330 is much higher concentrated, the probability of CRISPR B to enter the cells together with CRISPR A is high. Thus we are convinced CRISPR A & B are transfected together to the cells
Cheers,
Fatwa