Changelog / Updates

[Jan Winter]

CRISPRAnalyzeR V1.17 has been released!

V 1.17 (latest)

- fixed BAGEL issues

- added the possibility to download all data from the DATA REVIEW tab

- improved the performance ovberall

- replaced FASTQ handling by new FASTQ and SAM parser based on RUST -> speed increase by 6x!

- improved report

- added Visualization of GenomeCRISPR data in Hit Confirmation -> Gene Overview

- added Essential / Non-essential gene Read count in Quality Control

- added Essential/non-essential Log2 FC in Hit Calling section -> you can compare the effect to any published CRISPR screened cell line in GenomeCRISPR

V1.141

- adapted to Ensembl Database changes

Please update to 1.141 as the Hit Confirmation Section will not work due to changes in the Ensembl data structure!

V 1.11

- smaller UI changes to make it easier to use

- fixed bowtie2 error message

- included tutorial videos

Version 1.10

- added possibility to have log files exported in real time for debugging using -v parameter (see bottom of the page for debugging section)

- added status information on the Download CRISPRAnalyzeR page to show what features are active/inactive

- added additional error message for data mapping using bowtie2, so users now see what is the exact issue

- FASTQ options only display in case FASTQ.gz files have been uploaded

Version 1.09

- fixed glitches in data handling for Gene Overview section

- fixed proxy/no proxy issues

- added another progress bar to highlight sgRNA re-evaluation status

- added short help GIF animation to show how to adjust FASTQ regular expressions

- streamlined code

Version 1.08

- fixed rare internet connectivity issues

- updated filename handling -> automatically removes unwanted characters

- updated libraries

Version 1.07        (outdated)

- fixed report crashing

Version 1.04        (outdated)

Version 1.01     (outdated)

Version 0.99    (outdated)