RefSeq ID in library file/mapped reads

[Anuja Sathe]

Hi,

I am working with screen data generated using the SAM library from Feng Zhang. I have mapped read count files but these as well as the sgRNA library info use RefSeq IDs. Is there a way to use these in CAR?

If not could you suggest a way to replace the RefSeq IDs with a compatible annotation for CAR, but retain the rest of the data in the files.

Thanks,

Anuja. 

[Jan Winter]

Hi Anuja,

I added RefSeq protein IDs and hope this is what you were looking for.

if not, please let me know which you miss exactly and I will add it.

Cheers

Jan

[Anuja Sathe]

Hi Jan,
Sorry I meant RefSeq NM for mRNA.
Thanks a lot!