Procedure stuck when running slice_timing

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Moyan Li

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Jun 19, 2021, 4:57:29 PM6/19/21

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Hi,

I encountered a problem when I run the default C-PAC pipeline with conmmand:

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cpac run /nfs/turbo/jiankanggroup/hcp_rest/data /nfs/turbo/jiankanggroup/hcp_rest/try/newdata/outputs participant --data_config_file /nfs/turbo/jiankanggroup/hcp_rest/try/data_config_try.yml --skip_bids_validator

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It seems that it just stuck at some point when running "slicing timing". After it showed the warnings below, the procedure did not continue and I did not get any output files. I am really confused about this problem. I would appreciate if you could give me some suggestions.

Best,

Moyan

Jon Clucas

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Jun 22, 2021, 12:33:44 PM6/22/21

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Hi Moyan,

See response 1 here.

Based on the callback log in that thread, I'd estimate slice timing would need 7.4 GB for those input data, so --mem_gb 7 would still be too low.

Jon Clucas, MIS
Associate Software Developer Computational Neuroimaging Lab Child Mind Institute 646.625.4319 childmind.org \| Location

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