Exception in thread "main" java.lang.OutOfMemoryError: Java heap space

[malcook]

Hi,

any pointers for solving this out of memory error while loading
BIOGRID-ORGANISM-Saccharomyces_cerevisiae-2.0.52.psi.xml

??

Thanks!


Using CPATH_HOME /n/site/src/bioinfo/cpath/cpath_beta_07_rc2
cPath Admin. cPath Version: 0.7 (Beta) Release Date: April 1, 2007
Copyright (c) 2005-2006 Memorial Sloan-Kettering Cancer Center.

...

Validating XML File: /n/site/src/bioinfo/cpath/cpath_beta_07_rc2/
bin/../../textfiles/BIOGRID-ORGANISM-
Saccharomyces_cerevisiae-2.0.52.psi.xml
XML File is Valid.
Reading in file: BIOGRID-ORGANISM-
Saccharomyces_cerevisiae-2.0.52.psi.xml
XML Type: PSI_MI
Reading in file content...
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
at java.util.Arrays.copyOfRange(Arrays.java:3209)
at java.lang.String.<init>(String.java:216)
at java.lang.StringBuffer.toString(StringBuffer.java:585)
at org.mskcc.pathdb.sql.dao.DaoImport.implementJdkWorkAround
(DaoImport.java:265)
at org.mskcc.pathdb.sql.dao.DaoImport.addRecord(DaoImport.java:195)
at org.mskcc.pathdb.tool.LoadBioPaxPsi.importDataFile
(LoadBioPaxPsi.java:81)
at org.mskcc.pathdb.tool.Admin.importPsiMiFile(Admin.java:333)
at org.mskcc.pathdb.tool.Admin.importDataFromSingleFile(Admin.java:
283)
at org.mskcc.pathdb.tool.Admin.importData(Admin.java:250)
at org.mskcc.pathdb.tool.Admin.main(Admin.java:151)