admin.pl index fails after loading Reactome.owl

[pradeep]

I followed each and every step as given in documentation on windows XP
32bit machine with 8GB and quad core pentium.
I downloaded reactome bioPax file from reactome database and loaded.
The loading was successful ( had to change field size of some
tables). After loading the data I tried to index but does not complete
it errors. However before this I had tried with the owl file which is
given in sample directory. The indexing worked fine for that.

-Xmx in admin.pl is set to 1500M / I have also tried with default
1024M both the cases it fails. Please see the error message below.
your help will be highly appreciated.

Thanking You
--Pradeep

bin>admin.pl index
Using CPATH_HOME E:\cPath\cpath_beta_07_rc2.tar
cPath Admin. cPath Version: 0.7 (Beta) Release Date: April 1, 2007
Copyright (c) 2005-2006 Memorial Sloan-Kettering Cancer Center.

----------------------------------
Database Name: cpath
Database Host: localhost
Database User: root
Database Password: mysql
----------------------------------

Precomputing tables
Storing Pathway Membership Data
................................................................................
....................
Percentage Complete: 10%
Mem Allocated: 4.938 MB, Mem used: 2.286 MB, Mem free: 2.651 MB
................................................................................
....................
Percentage Complete: 19%
Mem Allocated: 4.938 MB, Mem used: 3.46 MB, Mem free: 1.478 MB
.....
-----------------------------------------
Fatal Error: org.jdom.input.JDOMParseException: Error on line 1:
Content is not
allowed in prolog.
-----------------------------------------

[pradeep]

Hi,
After reporting this error. I started fresh db installation and
application build -- and generated new war. I did not see the problem
I reported earlier. :) I am successfully running latest Reactome
biopax data on my system.
Now I will try to load other similar pathway data.

cpath is an excellent contribution to the community.
Thanks for making it available free of cost.
--Pradeep