psi-mi data import error

[Rob]

Hello:
I have this error when attempting to import psi data.
Any ideas?

./admin.pl -f ../testData/psi_mi/dip_psi.xml

Using CPATH_HOME /home/rewing/lib/java/cpath/
log4j:ERROR setFile(null,true) call failed.
java.io.FileNotFoundException: /srv/www/tomcat5/base/logs/pc_log.txt
(No such file or directory)
at java.io.FileOutputStream.openAppend(Native Method)
at java.io.FileOutputStream.<init>(FileOutputStream.java:177)
at java.io.FileOutputStream.<init>(FileOutputStream.java:102)
at org.apache.log4j.FileAppender.setFile(FileAppender.java:272)
at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:
151)
at org.apache.log4j.DailyRollingFileAppender.activateOptions
(DailyRollingFileAppender.java:206)
at org.apache.log4j.config.PropertySetter.activate
(PropertySetter.java:247)
at org.apache.log4j.config.PropertySetter.setProperties
(PropertySetter.java:123)
at org.apache.log4j.config.PropertySetter.setProperties
(PropertySetter.java:87)
at org.apache.log4j.PropertyConfigurator.parseAppender
(PropertyConfigurator.java:645)
at org.apache.log4j.PropertyConfigurator.parseCategory
(PropertyConfigurator.java:603)
at org.apache.log4j.PropertyConfigurator.configureRootCategory
(PropertyConfigurator.java:500)
at org.apache.log4j.PropertyConfigurator.doConfigure
(PropertyConfigurator.java:406)
at org.apache.log4j.PropertyConfigurator.doConfigure
(PropertyConfigurator.java:432)
at org.apache.log4j.helpers.OptionConverter.selectAndConfigure
(OptionConverter.java:460)
at org.apache.log4j.LogManager.<clinit>(LogManager.java:113)
at org.apache.log4j.Logger.getLogger(Logger.java:85)
at org.apache.commons.logging.impl.Log4JLogger.getLogger
(Log4JLogger.java:229)
at org.apache.commons.logging.impl.Log4JLogger.<init>
(Log4JLogger.java:65)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance
(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance
(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.apache.commons.logging.impl.LogFactoryImpl.newInstance
(LogFactoryImpl.java:529)
at org.apache.commons.logging.impl.LogFactoryImpl.getInstance
(LogFactoryImpl.java:235)
at org.apache.commons.logging.LogFactory.getLog(LogFactory.java:370)
at net.sf.ehcache.CacheManager.<clinit>(CacheManager.java:93)
at org.mskcc.pathdb.util.cache.EhCache.initCache(EhCache.java:80)
at org.mskcc.pathdb.tool.Admin.main(Admin.java:107)
log4j:ERROR Either File or DatePattern options are not set for
appender [A1].

----------------------------------------------------------
Fatal Error: You Must Specify a Command
----------------------------------------------------------

[Rob]

Problem solved - the documentation should read:

./admin.pl import -f ../testData/psi_mi/dip_psi.xml

[Gary Bader]

Hi Rob,
Thanks for the update. Sorry we didn't have a chance to reply before
you figured it out.

Cheers,
Gary

--
http://baderlab.org
Terrence Donnelly Centre for Cellular and Biomolecular Research
University of Toronto