Dear Matthias,
Thanks for the quick reply. After restarting the calculations a few times with subsequently larger values of U, the SCF and the whole geometry optimization converged using MULLIKEN. However, I would like to run MD on this system and after about 100 steps the same warning on unphysical Mulliken charges and negative U contribution to the energy appears and the SCF does not converge anymore. Using U_RAMPING [eV] 0.1 and INIT_U_RAMPING_EACH_SCF did not help. It seems that not only DFT+U is sensible to changes in the charge densities in the first SCF but also to changes from the previous MD step. I wonder if you or somebody else has experienced a similar issue and have any hint on that.
Best wishes,
Gabriele.