Troubleshooting: changing periodicity and index to radix array not found

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Michela Cavalieri

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9:49 AM (11 hours ago) 9:49 AM
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Hello everyone!
I have tried to troubleshoot this on my own for the past two weeks with no success. Could I get some advice? Here is my process:
  1. I prepared a 256 Ga atom slab with XYZ periodicity.
    The stress tensor and pressure fluctuations matched my calculated fluctuation values. I got good convergence for temperature.
    1. I creating a bulk structure of my desired final dimensions. Vacuum padding was 1/2 of the interatomic distance of Ga-Ga bond (ca 1.35 A). GEO_OPT.
    2. NVT MD
    3. NPT MD
    4. Added vacuum layer in the z-direction to form a surface.
    5. NPT MD. (last restart, stress trajectory and output: Ga1_NPT_vac_15-1.restart Ga1_NPT_vac_15-1.stress 18202783.out)
  2. I prepared an explicit solvent structure using Maestro Schrodinger and added it on top. (Ga_solvent.xyz). Total 1690 atoms. 
    I have been trying since to run GEO_OPT with XY periodicity to no avail (geoopt (2).in). All of my attempts result in the Index to Radix Array Not Found error.
    See 18821106.out for example.
So far, I have tried to:
  • Reduce CUTOFF and REL_CUTOFF from 600, 60 to 400, 40.
  • Rounding off my unit cell dimensions.
  • Changed FFT library.
  • Added vacuum in Z.
  • Switched POISSON_SOLVER from WAVELET to MT.
And I am still getting the same error. I have hit a wall with my understanding of the software and I am hoping someone will help me understand what is going on. Is my only option to do XYZ periodicity? 

Thank you very much,

Michela Cavalieri
18202783.out
geoopt (2).in
18821106.out
Ga1_NPT_vac_15-1.stress
Ga_solvent.xyz
Ga1_NPT_vac_15-1.restart
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