Troubleshooting: changing periodicity and index to radix array not found
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Michela Cavalieri
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9:49 AM (11 hours ago) 9:49 AM
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to cp2k
Hello everyone!
I have tried to troubleshoot this on my own for the past two weeks with no success. Could I get some advice? Here is my process:
I prepared a 256 Ga atom slab with XYZ periodicity. The stress tensor and pressure fluctuations matched my calculated fluctuation values. I got good convergence for temperature.
I creating a bulk structure of my desired final dimensions. Vacuum padding was 1/2 of the interatomic distance of Ga-Ga bond (ca 1.35 A). GEO_OPT.
NVT MD
NPT MD
Added vacuum layer in the z-direction to form a surface.
NPT MD. (last restart, stress trajectory and output: Ga1_NPT_vac_15-1.restartGa1_NPT_vac_15-1.stress18202783.out)
I prepared an explicit solvent structure using Maestro Schrodinger and added it on top. (Ga_solvent.xyz). Total 1690 atoms. I have been trying since to run GEO_OPT with XY periodicity to no avail (geoopt (2).in). All of my attempts result in the Index to Radix Array Not Found error. See 18821106.out for example.
So far, I have tried to:
Reduce CUTOFF and REL_CUTOFF from 600, 60 to 400, 40.
Rounding off my unit cell dimensions.
Changed FFT library.
Added vacuum in Z.
Switched POISSON_SOLVER from WAVELET to MT.
And I am still getting the same error. I have hit a wall with my understanding of the software and I am hoping someone will help me understand what is going on. Is my only option to do XYZ periodicity?