All tests passed, but binary segfaulting: What is going on?!
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Espen Tangen
May 14, 2019, 3:28:13 AM5/14/19
to cp...@googlegroups.com
I am trying to run the H2O-128.inp with both popt and psmp; and for both - where I have spent some time getting them through the test-suite; I get this:
Extrapolation method: initial_guess
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
cp2k.popt 00000000089144D4 for__signal_handl Unknown Unknown
libpthread-2.17.s 00002AFA6D7B16D0 Unknown Unknown Unknown
cp2k.popt 0000000002650F5F Unknown Unknown Unknown
cp2k.popt 000000000264B9F1 Unknown Unknown Unknown
cp2k.popt 000000000264ACF8 Unknown Unknown Unknown
cp2k.popt 000000000263E6D7 Unknown Unknown Unknown
cp2k.popt 000000000263A05F Unknown Unknown Unknown
cp2k.popt 0000000001080525 Unknown Unknown Unknown
cp2k.popt 0000000000C8209F Unknown Unknown Unknown
cp2k.popt 0000000001145C3A Unknown Unknown Unknown
cp2k.popt 00000000011466CA Unknown Unknown Unknown
cp2k.popt 00000000011504D2 Unknown Unknown Unknown
cp2k.popt 0000000000D8F0FA Unknown Unknown Unknown
cp2k.popt 00000000009ACC21 Unknown Unknown Unknown
cp2k.popt 00000000013866E5 Unknown Unknown Unknown
cp2k.popt 0000000001384D49 Unknown Unknown Unknown
cp2k.popt 0000000000FA0352 Unknown Unknown Unknown
cp2k.popt 0000000000534357 Unknown Unknown Unknown
cp2k.popt 000000000053372F Unknown Unknown Unknown
cp2k.popt 0000000000496DBE Unknown Unknown Unknown
cp2k.popt 0000000000495952 Unknown Unknown Unknown
cp2k.popt 000000000046C82D Unknown Unknown Unknown
cp2k.popt 00000000089784D2 main Unknown Unknown
libc-2.17.so 00002AFA74903445 __libc_start_main Unknown Unknown
cp2k.popt 000000000046BD29 Unknown Unknown Unknown
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
cp2k.popt 00000000089144D4 for__signal_handl Unknown Unknown
libpthread-2.17.s 00002B1E631696D0 Unknown Unknown Unknown
cp2k.popt 0000000002650F5F Unknown Unknown Unknown
cp2k.popt 000000000264B9F1 Unknown Unknown Unknown
cp2k.popt 000000000264ACF8 Unknown Unknown Unknown
cp2k.popt 000000000263E6D7 Unknown Unknown Unknown
cp2k.popt 000000000263A05F Unknown Unknown Unknown
cp2k.popt 0000000001080525 Unknown Unknown Unknown
cp2k.popt 0000000000C8209F Unknown Unknown Unknown
cp2k.popt 0000000001145C3A Unknown Unknown Unknown
cp2k.popt 00000000011466CA Unknown Unknown Unknown
cp2k.popt 00000000011504D2 Unknown Unknown Unknown
cp2k.popt 0000000000D8F0FA Unknown Unknown Unknown
cp2k.popt 00000000009ACC21 Unknown Unknown Unknown
cp2k.popt 00000000013866E5 Unknown Unknown Unknown
cp2k.popt 0000000001384D49 Unknown Unknown Unknown
cp2k.popt 0000000000FA0352 Unknown Unknown Unknown
cp2k.popt 0000000000534357 Unknown Unknown Unknown
cp2k.popt 000000000053372F Unknown Unknown Unknown
cp2k.popt 0000000000496DBE Unknown Unknown Unknown
cp2k.popt 0000000000495952 Unknown Unknown Unknown
cp2k.popt 000000000046C82D Unknown Unknown Unknown
cp2k.popt 00000000089784D2 main Unknown Unknown
libc-2.17.so 00002B1E6A2BB445 __libc_start_main Unknown Unknown
cp2k.popt 000000000046BD29 Unknown Unknown Unknown
submit command is:
mpirun cp2k.popt H2O-128.inp
or corresponding for psmp binary.
Frederick Stein
May 14, 2019, 11:03:58 AM5/14/19
to cp2k
Hi Espen,
Without any further hints, it is rather difficult to provide a diagnosis. (cf. https://www.cp2k.org/howto:gethelp)
Could you provide your input and output files (input file is from tests/QS/benchmark, isn't it?). The backtracing that you provided is not useful. For the output file, could you recompile with added debug options (for intel: -g -traceback, for gnu: -g) and rerun the calculation.
Regards
Frederick
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