Compilation failure on `bash install.sh` on amd64

[Robert Syme]

Hi all

Make is failing during `bash install.sh` of CORTEX_release_v1.0.5.21. The tail of the Make log is here: https://gist.github.com/robsyme/00637d9b62515c3605c4a56f81923a6c

The failure seems to be in the command:

    gcc -o needleman_wunsch -O3 -DSCORE_TYPE='int' -Wall \

    -I . -I ./libs/utility_lib -I ./libs/string_buffer \

    -I ./libs/bioinf -I ./libs/alignment_scoring \

    nw_cmdline.c needleman_wunsch.c \

    ./libs/alignment_scoring/*.c ./libs/utility_lib/utility_lib.c \

    ./libs/bioinf/bioinf.c ./libs/string_buffer/string_buffer.c -lz

When run from the scripts/analyse_variants/needleman_wunsch directory. Where the `string_buff_strlen` function is undefined. The string_buff_strlen function *is* defined in ./libs/string_buffer/string_buffer.h, so I'm not sure why the linker is failing. Any help is appreciated. Thanks!

$ gcc --version

gcc (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 20160609

-r

[Zamin Iqbal]

Apologies for the huge delay, and thanks to "nalyzer" for prodding me.

I believe this is now fixed at the tip of github

https://github.com/iqbal-lab/cortex

[Robert Syme]

Thanks Zamin!

-r