Error detecting bubbles from all colours

Cole Lyman

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Mar 31, 2017, 7:23:58 PM3/31/17

to cortex_var

Hi all,

I am using Cortex, version 1.0.5.21, and I recently tried to detect bubbles from all colours by using the parameter:

--detect_bubbles1 -1

according to the manual (pg. 4, "Use -1 to specify all colours.").

However, I got the following error:

cortex_var_31_c500:Problem withcmdlineargument for[--detect_bubbles1]
[--detect_bubbles1]  option requires twosets of comma-separated integers, separated by aforward-slahs.eg 1/1,or 1,2,3/3,4,5

If anyone know how I can detect all bubbles from a graph, please let me know!

Best,

Cole

Zamin Iqbal

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Mar 31, 2017, 7:32:18 PM3/31/17

to cortex_var

Sorry for the slow reply Cole. You just need to say

--detect_bubbles1 -1/-1

ie all-colours against all colours.

Alternatively, this is all wrapped up by run_calls, and you can just use the joint workflow, and this will be done for you automatcally

regards

Zam

Cole Lyman

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Apr 10, 2017, 10:23:43 AM4/10/17

to cortex_var

Thank you!

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