Re: error while loading shared libraries: libgsl.so.0 and libgslcblas.so.0

[Zamin Iqbal]

Thanks for these Fernando. What OS do you have on the two servers?

In both cases, you ran the standard install.sh in the root of the release?

[Fernando Cruz - Gmail]

Hi Zam,

On 30 January 2013 14:06, Zamin Iqbal <zam.iqba...@gmail.com> wrote:

Thanks for these Fernando. What OS do you have on the two servers?

 

Linux OS based on Red Hat Enterprise 4.0 -  at the server that everything works.

Linux OS CentOS release 5.8 (Final) at the troublemaker server.

 

In both cases, you ran the standard install.sh in the root of the release?

 

Yes, in both cases worked the install.sh at root. I also was able to compile cortex in both. The problem with the library comes up when executing cortex_var_K_C

apparently is a matter of going to the gsl-1.15/ and run install-sh -then export the two libraries I commented to $LD_LIBRARY_PATH

Cheers,
Fernando

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[Zamin Iqbal]

Thanks for this info Fernando!

Z

[Zamin Iqbal]

Hi Tatum

install-sh is in the GSL directory. The idea is to run the install.sh (note DOT sh) in the main Cortex directory.

Could you try that?

best

Zam

[Zamin Iqbal]

Hi MH

Are you running install.sh in the main directory and getting an error that mentions install-sh, 

or are you running libs/gsl-1.15/install-sh?

best

Zam

[Zamin Iqbal]

Hi Tatum

What happens if you type this

export LD_LIBRARY_PATH=/path/CORTEX_release_v1.0.5.whatever/libs/gsl-1.15/:/path/CORTEX_release_v1.0.5.whatever/libs/gsl-1.15/.libs:/path/CORTEX_release_v1.0.5.whatever/libs/gsl-1.15/blas/.libs/

and then try running Cortex?

Zam

[Zamin Iqbal]

Hi Tatum

 

After typing that and trying to run cortex again, I got the following error:

error while loading shared libraries: libgslcblas.so.0: cannot open shared object file: No such file or directory

How annoying. OK, let's double check something (sorry to ask this but..)

Did you literally type this:

 

export LD_LIBRARY_PATH=/path/CORTEX_release_v1.0.5.whatever/libs/gsl-1.15/:/path/CORTEX_release_v1.0.5.whatever/libs/gsl-1.15/.libs:/path/CORTEX_release_v1.0.5.whatever/libs/gsl-1.15/blas/.libs/

or did you fix "path" and "whatever" to match wherever you have Cortex unzipped/installed?

 

Zam

[Jia-Xing Yue]

Hi Zam,

I ran into the same problem after installed and executed the program on our cluster. I copied the command you give and substituted the right path for my installation but it still have the same problem.

Best,
Jia-Xing