Construct a Graph from Several reference genomes and align reads to the graph

Marisa Matey Hernandez

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Sep 8, 2015, 9:35:14 AM9/8/15

to cortex_var, j.a.romer...@gmail.com

Hi, is it possible to construct a graph from several reference genomes and then align reads to this graph?

Thanks

Zamin Iqbal

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Sep 8, 2015, 9:42:06 AM9/8/15

to cortex_var, j.a.romer...@gmail.com

Not with Cortex, but we are working on this with another tool, not yet available, but soon
Z

Erik Garrison

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Sep 10, 2015, 6:49:10 AM9/10/15

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It is very close to possible to do this with vg for larger genomes (10-100M). Stay tuned.

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Zamin Iqbal

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Sep 10, 2015, 8:33:00 AM9/10/15

to cortex_var, j.a.romer...@gmail.com

It is very close to possible to do this with vg for larger genomes (10-100M). Stay tuned.

No worries Erik, we are tuned, greatly interested of course.

Once we have something working we'll make it visible/available asap

Z

Erik Garrison

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Sep 10, 2015, 9:26:41 AM9/10/15

to corte...@googlegroups.com, José Alejandro Romero Herrera

I'm looking forward to it!

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