(1) ATAQS new software for SRM and its published paper and sourcecode in sourceforage.
Mi-Youn Brusniak
Dear Corra Users,
With two years endeavor, we have published another software called ATAQS which is an integrated software platform that supports all stages of targeted, selected reaction monitoring (SRM)-based proteomics experiments including protein and peptide target selection, SRM transition optimization and post acquisition data analysis. ATAQS can be a great tool for follow up study of Corra detected peptide/protein candidates. You can find the provisional version of the paper http://www.biomedcentral.com/1471-2105/12/78/abstract
As a open source software, as we did for Corra, we also published Software in sourceforage under key word (Corra-ATAQS).
I also recently put entire developing code base tree in sourceforage and hope that some of you become contributor for the on-going development of the software of Corra, ATAQS and PIPE2.
I hope our Open source software project to be used in accelerating your projects and look forward your participation.
Warm Regards,
Mi-Youn
Mi-Youn Brusniak, Ph.D.
Computational Biology
Seattle Proteome Center
Tel: (206)732-1327