Calculation of EN, AN, EE, SH and He value

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Siou Ting Gan

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Apr 26, 2021, 2:36:00 AM4/26/21

to Core Hunter Users

Dear all, I am working on genotypic data of 186 lines with 107 SSR markers and am testing various programme, including core hunter, to establish core collections. Different sets of core collections were generated from different programme. I would like to evaluate the quality of these different core sets by comparing their EN, AN, EE, SH and He value.

I managed to obtain these value for the core set selected from CoreHunter using the script “evaluateCore”. However i am clueless how to calculate the values for core sets shortlisted by other software. Is CoreHunter able to perform such analysis? If yes, can someone kindly advise me the script? I presume the core set need to be listed before commanding the programme to perform calculation. If CoreHuner could not perform such analysis, is there any other software that i can use?

Thank you. Any help is much appreciated.

Best regards,

Gan

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