The "always.selected" parameter problem

[Hung-Wei Chen]

Hello group members,

I am a beginner of using CoreHunter 3. I used the example data from the corehunter package in R and I tried to use always.selected function. Unfortunately, I failed to select particular IDs I want. Can someone give me the suggestions to fix the problem? Thank you.

The code I ran in R as below:

library (corehunter)

dist.file <- system.file ("extdata", "distances.csv", package = "corehunter")

my.data <- distances (file = dist.file)

core.test <- sampleCore(my.fasta, always.selected = integer(1))

core.test2 <- sampleCore(my.fasta, always.selected = character("Bred_0003"))

After I ran the code:

core.test <- sampleCore(my.fasta, always.selected = integer(1))

or

core.test2 <- sampleCore(my.fasta, always.selected = character("Bred_0003"))

After I ran the code:

core.test <- sampleCore(my.fasta, always.selected = integer(1))

or

core.test2 <- sampleCore(my.fasta, always.selected = character("Bred_0003"))

The message showed:

Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl,  :

  java.lang.IllegalArgumentException: Error while creating subset solution: set of selected IDs should be a subset of set of all IDs.

[daveneti]

For anyone following this post please see https://github.com/corehunter/corehunter3/issues/108 for further details.