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Welcome to the user group for the Core Hunter software.
Please join to keep up to date with Core Hunter releases and ask for help.
Core Hunter can be downloaded from the
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Max Jones
,
Herman De Beukelaer
3
May 10
Build core around pre-selected accessions
Dear Herman, Thank you so much for that lightning-fast response! I was indeed using the desktop
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Build core around pre-selected accessions
Dear Herman, Thank you so much for that lightning-fast response! I was indeed using the desktop
May 10
Fuchuan Han
,
Herman De Beukelaer
2
May 10
java.lang.OutOfMemoryError
Hi Fuchuan, That's a huge dataset and from the error message you get, it seems you have hit the
unread,
java.lang.OutOfMemoryError
Hi Fuchuan, That's a huge dataset and from the error message you get, it seems you have hit the
May 10
Sharmila Murugesan
,
Herman De Beukelaer
2
Mar 21
Phenotypic data
Hi, Yes you can use Core Hunter based on phenotypic data only. Any of the distance-based metrics (E-
unread,
Phenotypic data
Hi, Yes you can use Core Hunter based on phenotypic data only. Any of the distance-based metrics (E-
Mar 21
Fuchuan Han
,
Herman De Beukelaer
2
Mar 20
Can objects generated by genotypes be saved locally?
Hi, Serialising with saveRDS won't work out of the box because the core hunter data object
unread,
Can objects generated by genotypes be saved locally?
Hi, Serialising with saveRDS won't work out of the box because the core hunter data object
Mar 20
Jeevan Dananjaya
3/19/22
help me to solve the error
Dear Sir/Madam, I tried to run sample program of Corehunter package in R program but I have following
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help me to solve the error
Dear Sir/Madam, I tried to run sample program of Corehunter package in R program but I have following
3/19/22
Avni Mann
3/15/22
Export selected Dataset
Hello. I am working on a distance matrix of about 300 accessions and have to select a subset of this
unread,
Export selected Dataset
Hello. I am working on a distance matrix of about 300 accessions and have to select a subset of this
3/15/22
Siou Ting Gan
4/26/21
Calculation of EN, AN, EE, SH and He value
Dear all, I am working on genotypic data of 186 lines with 107 SSR markers and am testing various
unread,
Calculation of EN, AN, EE, SH and He value
Dear all, I am working on genotypic data of 186 lines with 107 SSR markers and am testing various
4/26/21
bleckie
,
daveneti
3
7/24/20
Q&A
Converting genotype data
Hi Guy, Tassel will output in a variety of formats including Hapmap, Hapmap Diploid, HDF5, VCF, and
unread,
Q&A
Converting genotype data
Hi Guy, Tassel will output in a variety of formats including Hapmap, Hapmap Diploid, HDF5, VCF, and
7/24/20
subhadra chakrabarty
2/21/20
Q&A
input file error
hello, I am trying to make a coreset from a data set containing 28k+ markers and ~3500 lines. i have
unread,
Q&A
input file error
hello, I am trying to make a coreset from a data set containing 28k+ markers and ~3500 lines. i have
2/21/20
Laxman Adhikari
12/9/19
Q&A
how-to-interpret-result
Hi, I ran CorenHunter in terminal using R scripts. I only used marker matrix data. I got 41 core set
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Q&A
how-to-interpret-result
Hi, I ran CorenHunter in terminal using R scripts. I only used marker matrix data. I got 41 core set
12/9/19
Hung-Wei Chen
,
daveneti
2
12/6/19
Q&A
The "always.selected" parameter problem
For anyone following this post please see https://github.com/corehunter/corehunter3/issues/108 for
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Q&A
The "always.selected" parameter problem
For anyone following this post please see https://github.com/corehunter/corehunter3/issues/108 for
12/6/19
Gajanan Saykhedkar
,
daveneti
4
9/15/19
How to calculate only Modified rogers matrix for 391 genotypes with 1892 markers and export it in csv format?
Sorry for the late reply. Have you tried https://cran.r-project.org/web/packages/poppr/poppr.pdf Guy
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How to calculate only Modified rogers matrix for 391 genotypes with 1892 markers and export it in csv format?
Sorry for the late reply. Have you tried https://cran.r-project.org/web/packages/poppr/poppr.pdf Guy
9/15/19
Carmen Leida
,
Herman De Beukelaer
2
12/10/18
Q&A
phenotype file for R corehunter USERS
Hi Carmen, Can you send us an example of the file you are trying to read? Thanks Herman
unread,
Q&A
phenotype file for R corehunter USERS
Hi Carmen, Can you send us an example of the file you are trying to read? Thanks Herman
12/10/18
ljb...@cornell.edu
10/8/18
Q&A
extracting metrics from corehunter desktop version
Hi, I installed and am using the Corehunter 3 desktop version, and wondering how I can extract
unread,
Q&A
extracting metrics from corehunter desktop version
Hi, I installed and am using the Corehunter 3 desktop version, and wondering how I can extract
10/8/18
Luzie Ursula Wingen
,
Herman De Beukelaer
3
4/18/18
Q&A
problems with install in R on Linux with openjdk-9
Hi all, We have deployed an update of Core Hunter, version 3.2.1, to CRAN. It should fix install
unread,
Q&A
problems with install in R on Linux with openjdk-9
Hi all, We have deployed an update of Core Hunter, version 3.2.1, to CRAN. It should fix install
4/18/18
Pietro Delfino
,
Herman De Beukelaer
7
8/10/17
Q&A
Sample Core Using Both Genotypes and Phenotypes
Hi Pietro, Turns out I was right: there was a bug in our code when reading phenotype data with a
unread,
Q&A
Sample Core Using Both Genotypes and Phenotypes
Hi Pietro, Turns out I was right: there was a bug in our code when reading phenotype data with a
8/10/17
Scott Lee
, …
jframi
6
7/17/17
Previously sequenced lines
Hi Herman Thanks for your reply, While getting the information to reply to you, I figured out that my
unread,
Previously sequenced lines
Hi Herman Thanks for your reply, While getting the information to reply to you, I figured out that my
7/17/17
daveneti
3/12/17
Looking for Alpha testers for the Core Hunter desktop verson
Hi, Would anyone be interested in Alpha testing the graphical user interface version of Core Hunter?
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Looking for Alpha testers for the Core Hunter desktop verson
Hi, Would anyone be interested in Alpha testing the graphical user interface version of Core Hunter?
3/12/17
Pietro Delfino
,
Herman De Beukelaer
3
3/3/17
Core Hunter 3 documentation
Thanks a lot, very clear! Pietro Il giorno giovedì 2 marzo 2017 10:36:46 UTC+1, Herman De Beukelaer
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Core Hunter 3 documentation
Thanks a lot, very clear! Pietro Il giorno giovedì 2 marzo 2017 10:36:46 UTC+1, Herman De Beukelaer
3/3/17
Herman De Beukelaer
12/7/16
Core Hunter 3 released
Dear users, We are happy to announce that Core Hunter version 3 has been released, which was recoded
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Core Hunter 3 released
Dear users, We are happy to announce that Core Hunter version 3 has been released, which was recoded
12/7/16
eating kuo
,
Herman De Beukelaer
2
3/24/16
Core hunter in binary SNP data
Hi, What Core Hunter and Core Analyzer calculate as HE is the expected proportion of heterozygous
unread,
Core hunter in binary SNP data
Hi, What Core Hunter and Core Analyzer calculate as HE is the expected proportion of heterozygous
3/24/16
Cropinformatics
2/12/13
Announcement
www.corehunter.org web site down time
http://www.corehunter.org was down for the last few days. Everything should be working now, if you
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Announcement
www.corehunter.org web site down time
http://www.corehunter.org was down for the last few days. Everything should be working now, if you
2/12/13
daveneti
2/12/13
Announcement
Core Hunter Graphical User Interface
We hope to release soon a simple Graphical User Interface Core Hunter Interface. Please watch this
unread,
Announcement
Core Hunter Graphical User Interface
We hope to release soon a simple Graphical User Interface Core Hunter Interface. Please watch this
2/12/13