species other than human?

[Matthew]

Hi,

Can you please tell me if CopySeq is suitable for use with data from
species other than human? If so what extra steps are necessary
(preparation of a mappability file perhaps)?

Thanks!

[shruti]

Hi,
I'm also working with species other than human and
was wondering if you managed to run copyseq for any other species...

thanks,

[Sebastian Waszak]

Hi Matthew, Hi Shruti,

CopySeq is currently designed to run with human data only. Several input files are necessary to get it running for other species (e.g., G+C content files for GC normalization, copy-number invariable loci to estimate read-depth variance for the variance model, mappability maps). Therefore, it would take some time to adapt it to other species.

Cheers,

Sebastian