OTU table conversion

[Jose F Garcia Mazcorro]

Hi

I am new to CopyRighter. I managed to install it on my Windows 8 but I was hoping someone can help me out with the following issue:

QIIME gives OTU tables in biom format. However, I see that CopyRighter requires a distinct format. I looked into the preprocessing folder but I am not sure which one should I choose to transform my QIIME OTU table into a otu_table.qiime required by CopyRighter.

Thanks a lot for your help!

Jose

[Florent Angly]

Hi Jose,
The output is the corrected relative abundances (in %) and can be used
for all downstream analyses including diversity estimates (except
those diversity estimates that use count data instead of relative
abundance data).
The order of the OTUs in the output file should not have any
biological relevance.
Hope this helps,
Florent

On 28 July 2015 at 22:56, Jose F Garcia Mazcorro
<jgarcia...@gmail.com> wrote:
> Thanks, I used these commands: copyrighter -i otu_table_barley.qiime -d
> ssu_img40_gg201210.txt -o output and did work great but I having problem
> with the interpretation. My best guess is that I can use the resulting file
> as the otu table for diversity and all other further analysis in QIIME, am I
> correct?
>
> Also, the order of data seems different between my original otu_table and
> the resulting output from Copyrighter, do I need to be concerned with this?
> For your reference attached you will find both input and ouput files.
>
> Thanks again for your help and the fantastic tool you all created!
>
> Cheers - Jose
>
> On Tue, Jul 28, 2015 at 6:38 AM, Florent Angly <floren...@gmail.com>
> wrote:
>>
>> Hi Jose,
>>
>> Copyrighter will happily process Biom files. But make sure your taxonomic
>> classification was made with Greengenes 2012/10.
>>
>> Cheers,
>>
>> Florent
>>
>>
>> On 27/07/2015 7:31 pm, "Jose F Garcia Mazcorro"

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