Hello Torkel,
I would very much advice against removing the compartment. In SBML the
kinetic law must return values in extend unit per time unit. Extend
unit is normally amount unit. You will have to very be careful so that
other tools will get your intend correct. Note, in SBML there is always
a compartment in which a reaction takes place thus the multiplication
with the compartment is required to convert extend unit to
concentration unit.
Thanks,
Stefan
--
Stefan Hoops, Ph.D.
Research Associate Professor
Biocomplexity Institute & Initiative
University of Virginia
995 Research Park Boulevard
Charlottesville, VA 22911
Phone:
+1 540 570 1301
Email:
sho...@virginia.edu