Simulating of Styrene polymerization in free radicals .
37 views
Skip to first unread message
Edward Iwuchukwu
unread,
Oct 26, 2021, 2:52:16 PM10/26/21
Reply to author
Sign in to reply to author
Forward
Sign in to forward
Delete
You do not have permission to delete messages in this group
Copy link
Report message
Show original message
Either email addresses are anonymous for this group or you need the view member email addresses permission to view the original message
to COPASI User Forum
Good day everyone,
As a reminder to my question for your assistance in simulating the above reaction. I have challenges inputting the reactions (see attached). The most important steps are the propagation and termination(by disproportion and combination), since they are increasing chains.
I will appreciate you assistance thank you.
Frank Bergmann
unread,
Oct 26, 2021, 4:08:35 PM10/26/21
Reply to author
Sign in to reply to author
Forward
Sign in to forward
Delete
You do not have permission to delete messages in this group
Copy link
Report message
Show original message
Either email addresses are anonymous for this group or you need the view member email addresses permission to view the original message
to COPASI User Forum
COPASI can not handle increasing chains at this point. SO it would be a fixed chain length for each model. However, you could look into using the high level api's like CorC: https://github.com/jpahle/CoRC or Basico: https://basico.readthedocs.io to script the creation of the individual chains.
best
Frank
Pedro Mendes
unread,
Oct 26, 2021, 4:30:04 PM10/26/21
Reply to author
Sign in to reply to author
Forward
Sign in to forward
Delete
You do not have permission to delete messages in this group
Copy link
Report message
Show original message
Either email addresses are anonymous for this group or you need the view member email addresses permission to view the original message
to copasi-u...@googlegroups.com
To model polymer growth you are probably better off by using a
rule-based language and a network free simulation tool. With VCell
(https://vcell.org/) you could use the bionetgen language and then
simulate with NFsim all in one package.