COPASI User Forum

Hello Wanja, i would have to look at the exported file to be certain. If you can send it to me, i

Hello, just wanted to chime in as to why you see these warnings, in COPASI we made the decision to

Hi Frank, That's exactly what I was looking for, many thanks for your help! :-) Best, Daniel On

Hi Frank! Thank you for the suggestion. That actually worked perfectly! I used JFreeChart library to

PLEASE DISREGARD THIS POST. I accidently chose the wrong forum. My apologies for causing any

Hello Ruslan, first of all, the scaled Fischer-Matrix is scaled with the actual estimated values of

Yes, thank you, I overlooked the distinction between checking for boundaries (restriction on

Thanks a lot Frank, we will try it right away! Best, Rodrigo. On Mon, Aug 23, 2021 at 12:42 PM Frank

Hello Luis, as Stefan mentioned, yes indeed those are warnings that some iterations failed due to

Hi Jürgen, Many thanks for the quick reply and the advice. That has worked perfectly. Best wishes,

Just letting you know, that the issue has since been resolved and it is working again as intended.

Hello Kris, could you perhaps share the individual steps you used? (Feel free to send them just

Hi frank I understand that I am supposed to fix certain metabolites. In that case what should be the

Dear Sven, Thanks for the diagnosis of the problem with steady-states in my model, indeed you are

Dear Stefan, Thank you very much for your help. Kind regards, Konstantia On Tuesday, 1 June 2021 at

Hello Valeria, In the Parameter Estimation task COPASI calculates a scaled sum of squares of

Hello Kianah, whether you use the enzyme as product, substrate or modifier, depends entirely on the

Hello Hossam, in general, you can write ODE's for compartments, species or global quantities. For

Deadline for registrations on May 15! We are holding a virtual Computational Cell Biology Workshop,

Hi Frank, Thank you very much for your answer. Best regards, Konstantia On Wed, 28 Apr 2021 at 03:38,

Many thanks for your kind help. Finally we solved it! Joan El lunes, 5 de abril de 2021 a las 22:24:

Dear Frank, Thank you very much for your answer and help. Finally, I managed to save the sbml file in

Hello Konstantina, to define such a piecewiese expression i'd create a global quantity, with an

Hi all, Thank you very much for your help. I managed to load and simulate this SBML file with Build

22 nd CCB Workshop June 21-23, 2021 The 22 nd Annual Workshop on Computational Cell Biology will be

Hello Jim, This should theoretically possible but the GUI gets in your way. What you could do is to

Hello Hadrien, it seems that already in the initial state (that means before the simulation even

Hi Stefan Thanks. I wonder that if you have around 50 parameters to estimate, which is the best

Dear Pedro Got it. Thanks! We want to minimize the cost function between experimental data and

Thanks! On Thursday, March 11, 2021 at 8:34:05 AM UTC-5 sven....@gmail.com wrote: Hello weix, you can