COPASI User Forum

We invite you to a focused workshop on advanced parameter estimation techniques using COPASI, a

Dear All, Just a few further comments to this discussion: Reaction extents can still not be selected

Dear all, I managed to handle the different cases using conditional statements (see attached cps file

Please see discussion at: groups.google.com/g/copasi-user-forum/c/U2qYtRqSd-A/m/YL7sZcJWAwAJ

Dear All, Just a few further comments to this discussion: Reaction extents can still not be selected

Hello Nausheen, the image shows the difference of the manual edits. Where instead of a generic

Dear all, we are currently working with COPASI and imported SBML models for which we do time course

Hi Frank, thanks again. I think this is the the cleanest approach. No rush to create a template or

Thanks Frank! I have an inhibition for a receptor and it will be competitive inhibition with another

Converting species from concentrations to amounts is complex and highly dependent on the structure of

Hi Marc, Yes, the sensitivity analysis tool, when applied to time course, only takes into

Hello Sebastian, Zero order (constant) reaction kinetics can be used in COPASI with stochastic

Hello Marc, You could try the following: - create an additional event assignment for your event, that

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Hi Sanjana, I have a similar use case, and I use sbmlutils to create models programmatically in

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Hello Pedro, I found a Linux server on which I can run CopasiSE. So I should be able to test the

Hi Everyone, My company is looking for a COPASI expert to build a model of a multiplex (2 analytes)

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Hi, I am building a model that involves a reaction of a receptor binding with the ligand and then

Dear Frank, That helped me a lot to run the experiment in copasi. Like I said, the initial

Andrew Weller 06:53 (now) to COPASI User Forum Dear Frank and Stefan With immense thanks to you both.

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Hello Sebastian, The step size is only used in COPASI to determine the output time points. It does

Hello, what you can do is to create a global parameter with an assignment under "Global Quantity

Thank you, Professor. With regards, Manmath On Thu, Nov 21, 2024 at 4:11 PM <frank.thomas.bergmann

Hi Pedro, Thanks for sharing this! I have been able to simulate the events as desired. The time

I was thinking of incorporating the outcomes of different molecular weights for Hyaluronic acid in my

Dear Prof. Mendes, I appreciate the clarification! Many thanks. Emre On Monday, October 14, 2024 at 3

Hello everyone, I am currently using COPASI but whenever I use particle swarm to estimate the