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Mohamed Chilmeran
,
Hoops, Stefan (sh9cq)
3
Jun 30
Parameter Estimation for different experiments
Hello Dr. Stefan, Many thanks for your reply. That makes sense. I will take a look at the video. Best
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Parameter Estimation for different experiments
Hello Dr. Stefan, Many thanks for your reply. That makes sense. I will take a look at the video. Best
Jun 30
Ritika Saxena
,
Frank Bergmann
4
Jun 24
regarding doubt
Hello, * the error in the `glucose transport` reaction comes from the fact, that the rate law uses a
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regarding doubt
Hello, * the error in the `glucose transport` reaction comes from the fact, that the rate law uses a
Jun 24
Deepa
,
Hoops, Stefan (sh9cq)
5
Jun 16
Stability analysis
Thanks a lot, my mistake :) On Fri, Jun 17, 2022 at 7:26 AM 'Hoops, Stefan (sh9cq)' via
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Stability analysis
Thanks a lot, my mistake :) On Fri, Jun 17, 2022 at 7:26 AM 'Hoops, Stefan (sh9cq)' via
Jun 16
Deepa
,
Mendes,Pedro
3
Jun 16
Transition time
Hi Prof., Thank you so much for the explanation. Would it be wrong to have a transition time in hours
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Transition time
Hi Prof., Thank you so much for the explanation. Would it be wrong to have a transition time in hours
Jun 16
Deepa
,
Frank Bergmann
2
Jun 13
Numerical issues in parameter estimation
Hello Deepa, when running parameter estimation, it is quite common, to get into regions, where
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Numerical issues in parameter estimation
Hello Deepa, when running parameter estimation, it is quite common, to get into regions, where
Jun 13
Deepa
,
Frank Bergmann
3
Jun 12
Interpolating input experimental data for parameter estimation
Hello Frank, Thank you so much for helping me progress in the right direction. Deepa On Fri, Jun 10,
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Interpolating input experimental data for parameter estimation
Hello Frank, Thank you so much for helping me progress in the right direction. Deepa On Fri, Jun 10,
Jun 12
Deepa
,
Frank Bergmann
4
Jun 8
Using concentration ratio for parameter estimation
Hello Deepa, I replied privately to your question about the parameter estimation setup and the ratio
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Using concentration ratio for parameter estimation
Hello Deepa, I replied privately to your question about the parameter estimation setup and the ratio
Jun 8
Deepa
,
Hoops, Stefan (sh9cq)
5
Jun 8
Steady-state simulation
Hi Prof., Thank you for the clarification, I understand it now. Changing to initial expression helps.
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Steady-state simulation
Hi Prof., Thank you for the clarification, I understand it now. Changing to initial expression helps.
Jun 8
johnp
,
Frank Bergmann
2
Jun 7
Checksum for download
thank you for letting us know. While the main downloads are provided by the github releases. We can
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Checksum for download
thank you for letting us know. While the main downloads are provided by the github releases. We can
Jun 7
Dr. Gollapalli Pavan Scientist - Publication cell
,
Frank Bergmann
3
Jun 3
How to resolve this error
Dear Frank, Thank you for your reply I will send you my model privately Kindly help me in this regard
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How to resolve this error
Dear Frank, Thank you for your reply I will send you my model privately Kindly help me in this regard
Jun 3
sanjana kb
, …
Mendes,Pedro
4
Jun 3
Multiple light pulse input in copasi
Dear Dr. Bergmann and Dr. Mendes, Thank you so much for taking your time and sharing your insights
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Multiple light pulse input in copasi
Dear Dr. Bergmann and Dr. Mendes, Thank you so much for taking your time and sharing your insights
Jun 3
Tejal Odedra
, …
Frank Bergmann
3
Jun 2
how can i export the model in way i can include it in my thesis?
Hello Tejal, just to add to what matthias said. You received a warning message, that no author was
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how can i export the model in way i can include it in my thesis?
Hello Tejal, just to add to what matthias said. You received a warning message, that no author was
Jun 2
Hikmet Emre Kaya
,
Frank Bergmann
3
May 13
Local Parameter Units in Java Bindings
Hello Frank, Thanks a lot for the insight. In the meantime, do you suggest converting the values to
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Local Parameter Units in Java Bindings
Hello Frank, Thanks a lot for the insight. In the meantime, do you suggest converting the values to
May 13
Roma Smirnov
,
Frank Bergmann
3
May 13
Plot with sum of few specific species
I implemented it! Thank you for clear and detailed instruction! Roma On Monday, 9 May 2022 at 09:50:
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Plot with sum of few specific species
I implemented it! Thank you for clear and detailed instruction! Roma On Monday, 9 May 2022 at 09:50:
May 13
Roma Smirnov
,
Frank Bergmann
3
May 13
One coeficient for two or more reactions
Sorry for delayed response. Yeah, everything works now, thank you a lot! Roma On Monday, 9 May 2022
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One coeficient for two or more reactions
Sorry for delayed response. Yeah, everything works now, thank you a lot! Roma On Monday, 9 May 2022
May 13
Mendes,Pedro
,
Roma Smirnov
3
May 9
Computational Cell Biology Workshop Online May 23-25
Roma, I've replied to you privately. thanks Pedro On 5/9/22 06:37, Roma Smirnov wrote: > I
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Computational Cell Biology Workshop Online May 23-25
Roma, I've replied to you privately. thanks Pedro On 5/9/22 06:37, Roma Smirnov wrote: > I
May 9
Deepa
,
Frank Bergmann
5
May 3
Model import from SBML file
Hello Deepa, Thank you for sending the model. COPASI does change your original kinetic "v"
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Model import from SBML file
Hello Deepa, Thank you for sending the model. COPASI does change your original kinetic "v"
May 3
Deepa
,
Frank Bergmann
4
May 3
Mapping species to substrate/product in reactions with modifiers
Thank you so much for following up and sending the model, i'll be sure to let you know when this
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Mapping species to substrate/product in reactions with modifiers
Thank you so much for following up and sending the model, i'll be sure to let you know when this
May 3
Hideki Oka
,
Frank Bergmann
6
Apr 13
SBML assignment
Now I understood you, you were talking about the C Exporter. And indeed, the ODE exporters (same for
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SBML assignment
Now I understood you, you were talking about the C Exporter. And indeed, the ODE exporters (same for
Apr 13
Martin Brand
,
Frank Bergmann
3
Apr 7
Change axis labeling
Ok thanks! frank.thom...@gmail.com schrieb am Dienstag, 5. April 2022 um 12:04:30 UTC+2: We have no
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Change axis labeling
Ok thanks! frank.thom...@gmail.com schrieb am Dienstag, 5. April 2022 um 12:04:30 UTC+2: We have no
Apr 7
Kristof Altus
, …
Carlos Vera
6
Apr 1
Parameter estimation and rate constant values.
Dear Stefan, I will do as you suggest. I' ll tell if it work Thank you, carlos El viernes, 1 de
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Parameter estimation and rate constant values.
Dear Stefan, I will do as you suggest. I' ll tell if it work Thank you, carlos El viernes, 1 de
Apr 1
Hikmet Emre Kaya
, …
Frank Bergmann
82
Apr 1
Linking COPASI and Cytoscape
I actually fixed it by compiling and updating before I changed the status, and the updating and
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Linking COPASI and Cytoscape
I actually fixed it by compiling and updating before I changed the status, and the updating and
Apr 1
Sebino Hoo
,
Frank Bergmann
3
Mar 31
Installing COPASI on Heroku
Ok, just to report back. I found it extremely easy to use the COPASI python bindings in a Heroku
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Installing COPASI on Heroku
Ok, just to report back. I found it extremely easy to use the COPASI python bindings in a Heroku
Mar 31
Cal Davies
Mar 23
Steady State Result Changes Depending on the Loading Method
Hi all, I have a really strange case where my model is changing the result of the steady state
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Steady State Result Changes Depending on the Loading Method
Hi all, I have a really strange case where my model is changing the result of the steady state
Mar 23
Joan Serrano
,
Frank Bergmann
3
Mar 8
Change te Y-axis scale
Many thanks for your response. Finally, I downloaded the data file (txt) and created the graphic in
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Change te Y-axis scale
Many thanks for your response. Finally, I downloaded the data file (txt) and created the graphic in
Mar 8
PanosChatz
,
Frank Bergmann
3
Mar 5
Error while loading from url
Hi Frank, Thank you for your reply and for sending me the new snapshot of COPASI. Best regards,
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Error while loading from url
Hi Frank, Thank you for your reply and for sending me the new snapshot of COPASI. Best regards,
Mar 5
George
,
Frank Bergmann
3
Feb 25
Time Course plots
Thank you! Il giorno venerdì 25 febbraio 2022 alle 11:44:54 UTC+1 frank.thom...@gmail.com ha scritto:
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Time Course plots
Thank you! Il giorno venerdì 25 febbraio 2022 alle 11:44:54 UTC+1 frank.thom...@gmail.com ha scritto:
Feb 25
George
, …
Hoops, Stefan (sh9cq)
8
Feb 24
Time course error
Now when i run time course, the generated plots are so flat, are monotonous. Values don't vary
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Time course error
Now when i run time course, the generated plots are so flat, are monotonous. Values don't vary
Feb 24
Jean-pierre Mazat
,
Frank Bergmann
2
Feb 24
time course optimization in several conditions
Hello, to do this with parameter estimation you would include the initial value for the different
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time course optimization in several conditions
Hello, to do this with parameter estimation you would include the initial value for the different
Feb 24
Torkel Loman
, …
Mendes,Pedro
6
Feb 14
Simulating models from command line (or without using the GUI)
Thank both of you, this was very useful, I got it working now. Torkel On Wednesday, 9 February 2022
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Simulating models from command line (or without using the GUI)
Thank both of you, this was very useful, I got it working now. Torkel On Wednesday, 9 February 2022
Feb 14