COPASI User Forum

Oka, the best way to think about this is that the event generation and the data output are two

Apologies for the spam that you may have just seen. The messages have been deleted and the user

Hello, You could just enter this expression directly into COPASI as is. Where did you have problems

Hello, The reaction order has no influence on the simulation results. Reactions are converted into

Hello Frank, OH I cannot believe I skipped it (lack of morning coffee). That should work fine, then.

I'm sure there are COPASI expert that can help more, but quickly: Your experimental data gets

Yep, that was the problem. On the main tab the start time have been changed. The 'Time Course

Hello, fellow SBMLers, SBGNers, BioPAXers, BNGLers, and other modelers and developers, COMBINE in

Ah, that makes sense; I tried it but did not verify the existence of some of the expressions, which

Hello Theo, do you think you could (perhaps privately share the model code creating the model, or

Dear Frank, Apologies for my delayed response, and thank you for the clarification. I used the two

Dear colleagues, Time is running out for tutorials/workshop proposals and financial aid applications!

Dear Stefan, Thank you, it is sll right. Yes, IF() is a function, best regards, Oka 2023年8月25日金曜日 19:

Dear Hoops, Thank you for your swift and precise response to my previous email. Your help allowed me

please unsubscribe from this list. From: 'Hoops, Stefan (sh9cq)' via COPASI User Forum <

Dear Computational Biologists, The "Computational Modeling in Biology" Network (COMBINE,

Hi Jikson, I am not going to comment on whether this makes sense from a chemical point of view, I am

Hello Ricardo, this was an experimental feature that got accidentally enabled for the release. I don

> I'm getting stuck at finding the concentration as the points on the > plot appear as a

I am afraid your question is more about experimental works in cancerous signaling rather than about

You can express the concentration of your chemical species as mol/m^2 instead of mol/L. This can be

Dear Sven, Thanks a lot for all your help! I was able to fit my steady-state data with Copasi as you

Dear Biologists interested in Modeling, The 24th Annual Workshop on Computational Cell Biology will

Hi All, Say I have 5 species = A, B, C, D, E Reaction Rules - => A => B A => C B => D C

Hello, I can think of another way (with a different set of drawbacks...): You could use the parameter

I guess that the graphical features of Copasi are quite limited as the main purpose of Copasi is not

Thanks a lot, Frank! Best, Janek Frank Bergmann kirjutas kolmapäev, 12. aprill 2023 kl 09:20:31 UTC+3

Hi Jikson, A pseudo-first order reaction is written the same way as a true first-order reaction,

Thanks a lot, Frank! I'll give it a try. Best, Alexandre A 12 de abril de 2023 03:51:39, Frank

Dear Frank Thanks for your reply, as an R user - I'll try CoRC. Thanks! Ben On Wed, 29 Mar 2023