COPASI User Forum

Hello, the parameter scan task uses the time course task, so to adjust duration and all other

Hello, in your model you have many species that begin with an initial value of 0. The delta minimum

Dear All, The following set of reactions are present in our model, I ran the steady-state analysis

Hello Deepa * for an event to fire at the initial time .. you have to click on the checkbox, Fire at

Thanks Frank, I've just downloaded and have had a quick go - it looks good. Thanks for the quick

Hello Sven, thank you very much, this helped me now I have a clue on how to debug. Best! sven....@

Since these are correlations, you want numbers near zero. Near +1 means they are positively

Hello Mathias, The check for appropriate units has been improved however an incorrect message was

I figured out the problem: I have to paste 'writeSBML({})' command after the model generation

Hi Stefan, Thank you so much for the clarification. Best, Deepa On Fri, Oct 14, 2022 at 2:32 AM '

Following up on this: I am actually struggling to reproduce the kinetic parameters of a study for my

Dear all, I'm using COPASI to analyze the metabolism of one compound by two enzymes. I also use

Hi Frank, It does indeed work! I just noticed a syntax error in my code and fixed it. Thanks! On

As a starting point just look for correlations among the parameters. Often you get strong

Hello Parvathy, I would probably model this as two reactions: v1: A -> B v2: A -> C where you

Hi Frank, I actually solved the issue, I forgot to run the process method for the MCA method before

Hi Stefan and Frank, I can confirm that this works: I can start CopasiUI after removing that file.

Hi Stefan, Thank you very much. I did not realize that I could have this option :-| Regards,

Dear Dr Mendes, Excellent thank you, I will try this! Best, Theo On Friday, July 22, 2022 at 3:28:51

Hello Dr. Stefan, Many thanks for your reply. That makes sense. I will take a look at the video. Best

Hello, * the error in the `glucose transport` reaction comes from the fact, that the rate law uses a

Thanks a lot, my mistake :) On Fri, Jun 17, 2022 at 7:26 AM 'Hoops, Stefan (sh9cq)' via

Hi Prof., Thank you so much for the explanation. Would it be wrong to have a transition time in hours

Hello Deepa, when running parameter estimation, it is quite common, to get into regions, where

Hello Frank, Thank you so much for helping me progress in the right direction. Deepa On Fri, Jun 10,

Hello Deepa, I replied privately to your question about the parameter estimation setup and the ratio

Hi Prof., Thank you for the clarification, I understand it now. Changing to initial expression helps.

thank you for letting us know. While the main downloads are provided by the github releases. We can

Dear Frank, Thank you for your reply I will send you my model privately Kindly help me in this regard

Dear Dr. Bergmann and Dr. Mendes, Thank you so much for taking your time and sharing your insights