there are several ways to do this. One is with a shell script; what is needed is a very simple script. Even if you do not have experience, a bit of googling should be enough to find help for this task; it will actually be worthwhile to learn how to write simple scripts.
But one can also manage without. From Haskell, the simplest is to use function system from module System; see
http://www.haskell.org/ghc/docs/6.12.2/html/libraries/haskell98-1.0.1.1/System.html
> system :: String -> IO ExitCode Source
> Computation system cmd returns the exit code produced when the operating system runs the shell command cmd.
So
system "java -jar lib/jasmin.jar myFile.j"
runs jasmin on myfile.j. Of course, you will need to build a string which takes the file name from the command line argumet and you will need to use the -d command line option to get the class file written in the correct directory. Probably you will need functions from System.FilePath to split file names into the directory name and the file name, and to remove the suffix etc.
Best regards
Björn