Dear all,
Not sure if this is related to the update of the package, but I used to kint PDF files of comparegroups without any problems.
Since recently (last month) I get an error every time I try to knit to pdf.
Here is the code I use in the R markdown document
--------------
# Select and process data
tabdata <- data %>%
select(status_menopauze, pik3ca_fold_change_tumorsko:arid1a_fold_change_normalno)
# Create table
table1 <- createTable(compareGroups(status_menopauze ~ .,
data = tabdata,
method = 1,
Q1 = 0, Q3 = 1, # minimum and maximum
min.dis = 5,
max.xlev = 5),
show.all = TRUE, digits = 2, q.type = c(2, 3), show.p.overall = TRUE)
# Produce table(s)
export2md(table1,
which.table = "descr",
header.labels = c(p.overall = "p value",
all = "All participants"),
width = "5cm")
----------
And here is the error I get
! Missing $ inserted.
<inserted text>
$
l.109 ...es table by groups of `status_menopauze'}
\\
Try to find the following text in endometrijum_report_v4.Rmd:
...es table by groups of `status_menopauze'}
You may need to add $ $ around a certain inline R expression `r ` in endometrijum_report_v4.Rmd (see the above hint). See
https://github.com/rstudio/rmarkdown/issues/385 for more info.
If I skip this variable, the next one produces the error, and so on. Knitting to Word or HTML works.
Any advice please?
Kind regards,
Stefan