I have examined your pdf file in "Adobe Acrobat X Pro"
(Version 10.1.3)and extracted all the images
to my filing system.
I.
Menu bar-->File-->Create-->PDF from Web Page-->
URL:
http://www.jones.cx/share/talks/Shields-Side-II-Final.pdf
II.
Meuu bar-->View-->Tools-->Document Processing-->Export all images.
This made it obvious that your document has been comprehensively
mangled and chopped into far too many small pieces something which
is, I regret, typical for MS Visio files. (I got 138 files, many of which are fragments of text, not true images.)
Those images that do correspond to 'wrecked' scanned photographs are
indeed wrecked. It looks to me like a fault with an 'interlacing' format.
If you could give us a link to a couple of original hi-res Tiffs, one
that worked and one that didn't, I would be happy to produce plain-and-simple pdfs from them.
Technical note:
The pdf format does not even demand that
you embed the graphics files in the pdf, it can pull them in from an
external url (including a local "file://....." one), and they can then
be in their original non-pdf format.
You can also have more than one version of the same graphic: for example a lo-res one for screen viewing and a hi-res one for the
glossy-magazine edition. It can all be done behind-the-scenes because
the pdf software on your computer knows how to have a 'conversation'
with your pdf-enabled printer without human intervention.
Kind Regards,
Ken