You are going to have to supply more evidence, or narrow the issue down
somewhat.
Installing Mathematica 9 will not remove previous versions, so I would
try running your problems on a previous version just to confirm that
they do still work.
Obviously, if the notebook is reasonably self contained, it may be best
to just send it to Wolfram Support, but I'd start by watching to
determine which cell of your notebook actually hangs.
It may also help to add a few Print statements at likely places to
follow the progress of your calculation.
If the notebook is small and self-contained enough, you could put it
somewhere on the internet and post a link here.
David Bailey
http://www.dbaileyconsultancy.co.uk