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NCI Imaging Data Commons April 2022 release
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Andrey Fedorov
Apr 6, 2022, 1:38:04 PM4/6/22
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NCI Imaging Data Commons (https://imaging.datacommons.cancer.gov/) April 2022 release is out!
Here are some of the highlights:
* Data (release notes here: https://learn.canceridc.dev/data/data-release-notes#v8-april-2022): slide microscopy imaging data is now available for all of the TCGA collections and for the NLST collection - that’s the total of >14 TB of new slide microscopy data (if you are curious how to get to this number, check out this query: https://gist.github.com/fedorov/a956b59eefb1f201477e5812e3817813)
* Portal (release notes: https://learn.canceridc.dev/portal/release-notes#8.0-april-4-2022-canceridc.202204050856.2920c81): you can now choose whether you want to search the collections that are no longer available in IDC, and they are now excluded by default; we also excluded those collections from the overall statistics on the front page, which resulted in the reduction in data summary numbers relative to v7
* Viewers (release notes: https://learn.canceridc.dev/portal/viewer-release-notes#4.12.17-february-2022-ohif): we added new features for quantitative microscopy imaging and several performance enhancements, including client-side decoding and color correction of compressed images using WebAssembly as well as transformation and rendering of images using WebGL
Live dashboard summarizing availability of IDC data is available here: https://datastudio.google.com/reporting/04cf5976-4ea0-4fee-a749-8bfd162f2e87/page/p_s7mk6eybqc.
Andrey Fedorov
NCI Imaging Data Commons co-PI
Here are some of the highlights:
* Data (release notes here: https://learn.canceridc.dev/data/data-release-notes#v8-april-2022): slide microscopy imaging data is now available for all of the TCGA collections and for the NLST collection - that’s the total of >14 TB of new slide microscopy data (if you are curious how to get to this number, check out this query: https://gist.github.com/fedorov/a956b59eefb1f201477e5812e3817813)
* Portal (release notes: https://learn.canceridc.dev/portal/release-notes#8.0-april-4-2022-canceridc.202204050856.2920c81): you can now choose whether you want to search the collections that are no longer available in IDC, and they are now excluded by default; we also excluded those collections from the overall statistics on the front page, which resulted in the reduction in data summary numbers relative to v7
* Viewers (release notes: https://learn.canceridc.dev/portal/viewer-release-notes#4.12.17-february-2022-ohif): we added new features for quantitative microscopy imaging and several performance enhancements, including client-side decoding and color correction of compressed images using WebAssembly as well as transformation and rendering of images using WebGL
Live dashboard summarizing availability of IDC data is available here: https://datastudio.google.com/reporting/04cf5976-4ea0-4fee-a749-8bfd162f2e87/page/p_s7mk6eybqc.
Andrey Fedorov
NCI Imaging Data Commons co-PI
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