Comet 2023.01 rev 2 is now available

[Jimmy Eng]

Comet 2023.01 rev. 2 is now available.
Release notes:  https://uwpr.github.io/Comet/releases/release_202301.html
Download link:  https://github.com/UWPR/Comet/releases

This is a minor release that addresses the following:

• mzML/mzXML files without the optional scan index would not be searched because their spectra could not be read. Support for this functionality was implemented in v2019.01.4 thru v2022.01.1 but was lost as of v2022.01.2 when MSToolkit code was updated from that library's repository. This functionality is re-implemented in this release. Thanks to J. Wang for reporting the issue.
• A parameter "export_additional_pepxml_scores" has been implemented. This is an optional/hidden parameter in that it is not written by default in the comet.params files; it needs to be added manually. When this parameter is present and it's value set to "1", additional search scores (lnrSp, deltLCn, lnExpect, and IonFrac) are reported in the pep.xml output. Feature request by J. Scheid, OpenMS group.