Comet search with peff database in proteome discoverer

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Christian Treitz

Apr 16, 2024, 9:34:19 AMApr 16
to Comet ms/ms db search support
I noticed the comet database search node in proteome discoverer (PD 3.1) and I was wondering if it is possible to perform a search with a peff database using this search node. It does not seem to be possible to import peff files in PD.
Thank you and best regards Christian

Jimmy Eng

May 2, 2024, 3:31:56 PMMay 2
to Comet ms/ms db search support
Sorry for the late response and this unhelpful answer which is I don't know but I would guess that PEFF is not supported in the PD node.  Thermo implemented the Comet node themselves and I don't have access to PD to even look into this.
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