Error code 139 when searching with "No enzyme"

[Nate Camp]

Hi Jimmy,

I'm trying to search with enzyme set to none, and when I run the prophets I am getting error code 139 (see attached pic). After a quick google search I don't really understand what this error means. Perhaps this has something to do with our HPC settings? I figured I'd check you first before running it by our IT department. I've also attached my params file in case something is fishy there.

Thanks for the help!

[Nate Camp]

Forgot to mention - everything runs fine when i run a standard trypsin search.

[Jimmy Eng]

Nate, can you send me that "20210720***100ng.pep.xml"?  Either in an email or via file share.  The hard part with this is that if you're going to need a software update to Comet or the TPP to address this issue, that's going to be painful based on everything we just went through/learned with central computing at your org. 

Jimmy

[Jimmy Eng]

Just to give some closure to this thread if anyone comes across this issue in the future, this issue was due to a bug present in Comet in the 2017 thru 2018 releases that was addressed in release 2018.01.2.  The bug manifests itself as corrupted masses in the pep.xml output when there is a static modification and no variable modifications specified in the search.  Using a newer versions of Comet would address this issue as it was identified and fixed back in 2018.