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Comet ms/ms db search support
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Comet ms/ms db search support
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Welcome to the Comet ms/ms database search Google group. You can find the Comet project at
https://uwpr.github.io/
Comet
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June Wang
,
Jimmy Eng
4
Mar 30
Comet V2023.01 does not work with mzML files converted from Thermo raw files.
June, this issue is addressed in the 2023.01.2 release available now. On Tuesday, March 21, 2023 at
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Comet V2023.01 does not work with mzML files converted from Thermo raw files.
June, this issue is addressed in the 2023.01.2 release available now. On Tuesday, March 21, 2023 at
Mar 30
Jimmy Eng
Mar 30
Comet 2023.01 rev 2 is now available
Comet 2023.01 rev. 2 is now available. Release notes: https://uwpr.github.io/Comet/releases/
unread,
Comet 2023.01 rev 2 is now available
Comet 2023.01 rev. 2 is now available. Release notes: https://uwpr.github.io/Comet/releases/
Mar 30
Jimmy Eng
Mar 15
Comet 2023.01 rev 1 is now available
Comet 2023.01 rev. 1 is now available. Release notes: https://uwpr.github.io/Comet/releases/
unread,
Comet 2023.01 rev 1 is now available
Comet 2023.01 rev. 1 is now available. Release notes: https://uwpr.github.io/Comet/releases/
Mar 15
Florian Prodinger
, …
Jimmy Eng
4
Mar 1
running comet on linux (fedora)
Florian, I'm not sure why but your replies to this conversion (that you have since deleted
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running comet on linux (fedora)
Florian, I'm not sure why but your replies to this conversion (that you have since deleted
Mar 1
David Tabb
,
Jimmy Eng
3
Feb 21
A PTM that can happen on any residue?
Hi, Jimmy. Thank you for your kind note and making a rapid fix to handle the "any AA" PTM
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A PTM that can happen on any residue?
Hi, Jimmy. Thank you for your kind note and making a rapid fix to handle the "any AA" PTM
Feb 21
Jimmy Eng
Jan 31
Comet 2023.01 rev. 0 is now available
Comet 2023.01 rev. 0 is now available. Release notes: https://uwpr.github.io/Comet/releases/
unread,
Comet 2023.01 rev. 0 is now available
Comet 2023.01 rev. 0 is now available. Release notes: https://uwpr.github.io/Comet/releases/
Jan 31
Debojyoti Pal
,
Jimmy Eng
2
11/27/22
Libra results for individual peptides in ProteinProphet results page
Hi. I was just going to reply to suggest that you post this to the spctools-discuss google group for
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Libra results for individual peptides in ProteinProphet results page
Hi. I was just going to reply to suggest that you post this to the spctools-discuss google group for
11/27/22
Jimmy Eng
11/17/22
bug report with "mass_offsets" and "prec_NL_ions" parameters
The "mass_offsets" parameter was introduced in Comet version 2015.02.0 and the "
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bug report with "mass_offsets" and "prec_NL_ions" parameters
The "mass_offsets" parameter was introduced in Comet version 2015.02.0 and the "
11/17/22
Roger Olivella
,
Jimmy Eng
2
10/31/22
Additional var mods added?
Roger, The first parameter entry for the variable_mod0X parameters is the modification mass
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Additional var mods added?
Roger, The first parameter entry for the variable_mod0X parameters is the modification mass
10/31/22
Jimmy Eng
2
9/14/22
Comet 2022.01 rev. 2 is now available.
I just updated this release to address a new issue with MGF files. The TITLE line entries are
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Comet 2022.01 rev. 2 is now available.
I just updated this release to address a new issue with MGF files. The TITLE line entries are
9/14/22
Srdfr
,
Jimmy Eng
5
8/19/22
filter fragmentation method from output
Thank you! On Thursday, 18 August 2022 at 21:55:18 UTC+2 jke...@gmail.com wrote: I'll send you
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filter fragmentation method from output
Thank you! On Thursday, 18 August 2022 at 21:55:18 UTC+2 jke...@gmail.com wrote: I'll send you
8/19/22
Jimmy Eng
7/25/22
Comet 2022.01 rev. 1 is now available
Comet 2022.01 rev. 1 is now available. Release notes: https://uwpr.github.io/Comet/releases/
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Comet 2022.01 rev. 1 is now available
Comet 2022.01 rev. 1 is now available. Release notes: https://uwpr.github.io/Comet/releases/
7/25/22
Chris Bielow
, …
Jimmy Eng
5
7/25/22
Search speed for variable modifications -- internal optimization potential?
Hi Roger. This little optimization will be included in the next minor release likely today (version
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Search speed for variable modifications -- internal optimization potential?
Hi Roger. This little optimization will be included in the next minor release likely today (version
7/25/22
Animesh Sharma
,
Jimmy Eng
3
6/23/22
*** buffer overflow detected ***
Just to give an update to this for anyone who may come across this thread in the future, the buffer
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*** buffer overflow detected ***
Just to give an update to this for anyone who may come across this thread in the future, the buffer
6/23/22
Shagun Gupta
, …
Jimmy Eng
3
6/23/22
Something like isolation interference (%) calculation
Comet doesn't provide this information and nor does anything in the Trans-Proteomics Pipeline as
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Something like isolation interference (%) calculation
Comet doesn't provide this information and nor does anything in the Trans-Proteomics Pipeline as
6/23/22
MT S
, …
Paulo C Carvalho
3
6/4/22
A new Comet user
I make myself available should you have any questions running comet with PatternLab. Please let me
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A new Comet user
I make myself available should you have any questions running comet with PatternLab. Please let me
6/4/22
Yiyang Liu
, …
Jimmy Eng
7
5/29/22
Search of fractionated mzML, merge or separately?
Good to know that you are seeing the same score produced. Just as an FYI: the "expect"
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Search of fractionated mzML, merge or separately?
Good to know that you are seeing the same score produced. Just as an FYI: the "expect"
5/29/22
anon anon
,
Jimmy Eng
4
5/3/22
direct search of thermo raw with msfile reader
* I should say; i installed both the 32 and 64 bit versions in that archive. On Tuesday, 3 May 2022
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direct search of thermo raw with msfile reader
* I should say; i installed both the 32 and 64 bit versions in that archive. On Tuesday, 3 May 2022
5/3/22
Jimmy Eng
5/2/22
Comet 2022.01 rev. 0 is now available.
Comet 2022.01 rev. 0 is now available. Release notes: https://uwpr.github.io/Comet/releases/
unread,
Comet 2022.01 rev. 0 is now available.
Comet 2022.01 rev. 0 is now available. Release notes: https://uwpr.github.io/Comet/releases/
5/2/22
Chen Huang
3/26/22
is there a way to parse the comet output .mzID file?
Hi, It looks like the current version of comet search outputs version 1.2 mzID file, and I cannot
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is there a way to parse the comet output .mzID file?
Hi, It looks like the current version of comet search outputs version 1.2 mzID file, and I cannot
3/26/22
Jeff Jones
,
Jimmy Eng
2
2/28/22
Precursor mass v Target Mass
Jeff, I apologize for the delayed response. I had no notification of this month old post and only
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Precursor mass v Target Mass
Jeff, I apologize for the delayed response. I had no notification of this month old post and only
2/28/22
Jimmy Eng
12/11/21
Comet 2021.02 rev. 0 is now available
Comet 2021.02 rev. 0 is now available. Release notes: https://uwpr.github.io/Comet/releases/
unread,
Comet 2021.02 rev. 0 is now available
Comet 2021.02 rev. 0 is now available. Release notes: https://uwpr.github.io/Comet/releases/
12/11/21
盛睿
,
Jimmy Eng
2
9/15/21
A new Comet user
Hi. That libid error indicated that you do not have Thermo's MSFileReader installed (and are
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A new Comet user
Hi. That libid error indicated that you do not have Thermo's MSFileReader installed (and are
9/15/21
Paulo C Carvalho
, …
Jimmy Eng
5
9/3/21
Question on DeltaCN and robustness in regards to search space size
I typed out, then re-typed my reply a number of times before hitting send and now I see I left
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Question on DeltaCN and robustness in regards to search space size
I typed out, then re-typed my reply a number of times before hitting send and now I see I left
9/3/21
Shagun Gupta
, …
Suresh Poudel
4
8/30/21
Comet search - Precursor Intensity column empty
I think you can easily use something like Pyteomics to get all the information from mzml or mzXml
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Comet search - Precursor Intensity column empty
I think you can easily use something like Pyteomics to get all the information from mzml or mzXml
8/30/21
natt...@gmail.com
7/13/21
Anyone have a download link for the program Preview?
Hi, Firstly, I apologise as this isn't related to comet. However, I need some help and couldn
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Anyone have a download link for the program Preview?
Hi, Firstly, I apologise as this isn't related to comet. However, I need some help and couldn
7/13/21
Daniel Nebauer
,
Jimmy Eng
2
7/6/21
New comet user
Hi Daniel. If you're new to Comet, you probably don't want to attempt to binaries I release
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New comet user
Hi Daniel. If you're new to Comet, you probably don't want to attempt to binaries I release
7/6/21
Jimmy Eng
,
Harald Barsnes
4
6/24/21
Comet 2021.01 rev. 0 is now available
Hi Jimmy, I can confirm that the progress display is now back to normal. Thanks for the quick fix!
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Comet 2021.01 rev. 0 is now available
Hi Jimmy, I can confirm that the progress display is now back to normal. Thanks for the quick fix!
6/24/21
Jimmy Eng
,
ros...@gene.com
3
5/11/21
Comet 2020.01 rev. 4 is now available
Chris, this minor release should have no impact whatsoever with the real time search. If you are just
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Comet 2020.01 rev. 4 is now available
Chris, this minor release should have no impact whatsoever with the real time search. If you are just
5/11/21
Dennis Goldfarb
, …
Jimmy Eng
4
4/10/21
delta mass calculation for percolator .pin file
Only the .pin output. On Sat, Apr 10, 2021 at 7:21 AM Manuel Belmadani <manuel.b...@gmail.com
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delta mass calculation for percolator .pin file
Only the .pin output. On Sat, Apr 10, 2021 at 7:21 AM Manuel Belmadani <manuel.b...@gmail.com
4/10/21