Re: Segmentation without specifying negative control samples/regions

[ramonv...@gmail.com]

Just resolve this question!

But i have a problem: there is no final output table as said in CODEX2.Rmd just an Rplots.pdf table.

Could you help me?

Em quinta-feira, 11 de julho de 2019 11:25:27 UTC-3, ramonv...@gmail.com escreveu:

Hi Yuchao,

I have another question, this time regarding segmentation after analyzing samples without specifying negative control samples/regions.

In segmentation part, i have to set the Yhat.ns and BIC.ns to Yhat.null and BIC.ns? Or for this case, segmentation is not suitable?

Best regards,

Ramon

[Yuchao Jiang]

You need to write the finalcall.CBS as a table and output.

Use write.table()

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