Identical CNVs residing in different chromosomes

[thomasj...@googlemail.com]

Hi all, 

My previous question has been resolved and I have run CODEX2 successfully. However my results include some CNVs that are identical in their CNV type, starting and ending base pair/exon and length. They only differ by their chromosome which seems unlikely! Has anyone encountered this before? Any help would be appreciated.

Many thanks,

Thomas Jones

[Yuchao Jiang]

Hi,

It’s probably just by chance. Have you checked the depth of coverage and the associated statistics?

Yuchao

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[thomasj...@googlemail.com]

Hi Yuchao,

Depth of coverage/ associated stats appear to be fine for the majority. Below is an example of the results, all from different samples. I have several more similar results. Could it be that somewhere upstream the positions are being matched by position rather than chromosome+position?

Many thanks,

Tom Jones

On Tuesday, 7 July 2020 11:47:37 UTC+1, Yuchao Jiang wrote:

Hi,

It’s probably just by chance. Have you checked the depth of coverage and the associated statistics?

Yuchao

On Jul 7, 2020, at 4:39 AM, thomasjones1505 via CODEX/CODEX2 for CNV detection <cod...@googlegroups.com> wrote:

Hi all, 

My previous question has been resolved and I have run CODEX2 successfully. However my results include some CNVs that are identical in their CNV type, starting and ending base pair/exon and length. They only differ by their chromosome which seems unlikely! Has anyone encountered this before? Any help would be appreciated.

Many thanks,

Thomas Jones

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