SVD did not converge

[Juan Sepulveda]

Dear community,

I am running optgp sampling on my human contextualized metabolic network models with 10k samples, 2k thinning, and 50 processes. This code is ran on my institution's HPC and I get the following error: SVD did not converge.

Does anyone have any experience with this error and how to fix it?

Thanks,

Juan

[Ronan M.T. Fleming]

Use CHRR or RHMC instead  

https://github.com/opencobra/cobratoolbox/blob/master/src/analysis/sampling/sampleCbModel.m

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Mr. Ronan MT Fleming B.V.M.S. Dip. Math. Ph.D.
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Associate Professor,

Digital Metabolic Twin Center, www.digitalmetabolictwin.org

& School of Medicine,

& Institute for Clinical Trials,
University of Galway.

Ireland.

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Coordinator of the Horizon Europe project "Reconstruction and Computational Modelling for Inherited Metabolic Diseases" (Recon4IMD)

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Peer-reviewed publications: https://goo.gl/FZPG23
Mobile:  +353 852 109 806
Github: @rmtfleming
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