excel to json in cobrapy

[Ehsan Salehabadi]

Hello dear Cobra Toolbox members,

To convert xls to mat files, there used to be a simple code called xls2model in matlab. I was wondering if there is such an easy code in cobrapy to convert xls directly to json. I searched for it through the documentation, but I couldn't find anything.

So, How to convert excel file contains reaction and metabolite sheets to Json?

Thank you,

Ehsan

[Ronan M.T. Fleming]

You could use xls2model in matlab, then import that into cobrapy and
generate your json. Or within matlab mat to json
https://github.com/opencobra/cobratoolbox/tree/master/src/base/io/json

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--
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Mr. Ronan MT Fleming B.V.M.S. Dip. Math. Ph.D.
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Associate Professor,
School of Medicine,
University of Galway,
Ireland.
Coordinator of the Horizon Europe project "Reconstruction and
Computational Modelling for Inherited Metabolic Diseases" (Recon4IMD)
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Peer-reviewed publications: https://goo.gl/FZPG23
Mobile: +353 852 109 806
Github: @rmtfleming
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[Ehsan Salehabadi]

Thank you very much Dr. Fleming.

May I ask another question about cobrapy here?
I would like to delete multiple reaction deletions (not single or double), and then optimize the growth rate. How am I supposed to do that? In matlab, we could easily do it by the code removeRxns, but for cobrapy, I couldn't find any result regarding that (only single and double reaction deletions). Does it mean that I have to delete the reactions one by one, and every time apply them to a new copy of the model?

Thank you and sincerely yours,
Ehsan