prepareFastGapFill Matrix index out of range for deletion

[Julie Rojas]

Hi,

I'm trying to fill gaps in my draft model (generated in Raven 2.0 and converted to cobra format), but I get this error:

Matrix index is out of range for deletion.
Error in prepareFastGapFill (line 154)
    MatricesSUX.MatrixPart(NullRxns==1)=[];

Here are the dimensions of my model

size(model.S) = 1906 1842

length(model.rxns) 1842

length(model.mets) 1906

Does anyone know why this might be happening?

Thanks a lot

(full code and model joined)

[Julie Rojas]

Simplifying the model in Raven before converting to Cobra got the model a bit further, but now I get a new error further down the line

Matrix index is out of range for deletion.

Error in prepareFastGapFill (line 175)
MatricesSUX.MatrixPart(ismember(MatricesSUX.rxns,inconsistRxnsSUXprime)) = [];