read SMBL problem (tag: @tpfau)

[Tatsuro Tanioka]

I'm getting an error using MATLAB 2015b and 2016b when I try to open a model (iNS934.xml). 

The model itself is valid on SBML checker.

Error message get is 

>> model=readCbModel('iNS934.xml')

Error using cellfun

Non-scalar in Uniform output, at index 1, output 1.

Set 'UniformOutput' to false.

Error in readSBML>extractGPRRule (line 447)

    ruleGenes = cellfun(@(x) regexp(x,'[^ \[\]\(\)\{\}]*','match'),geneFields);

Error in readSBML (line 214)

        [rule,cgenes] = extractGPRRule(grRule{i},model.genes,0);

Error in readCbModel (line 206)

        model = readSBML(fileName,defaultBound);

I can open other models. Are there any ways to fix this?

Thanks,

Tatsuro Tanioka

[Laurent Heirendt]

Hi Tatsuro,

Would you mind opening the issue here: https://github.com/opencobra/cobratoolbox/issues?

This will help to easier track this.

Thanks.

Laurent

[Tatsuro Tanioka]

To Laurent, 

I posted this to the link.

Tatsuro

[Laurent Heirendt]

Thanks Tatsuro.