This group forum is for users of The Constraint-Based Reconstruction and Analysis Toolbox (COBRA Toolbox) and those interested in COBRA in general.

When joining:

Please leave a quick note when joining this group to prove you are not a bot. It can literally be anything.

When posting questions regarding warnings or errors:
1) Make the question as detailed as possible to increase the probability of a rapid and helpful reply.
2) Append your message with the result of running https://github.com/opencobra/cobratoolbox/blob/master/src/base/generateSystemConfigReport.m so that we know what system we are helping you to debug. That is often the first question that comes to mind when considering to respond.

When posting a scientific question:

1) Check this publication to see if it has: Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0, Nature Protocols, Volume 14, pages 639–702, 2019 doi.org/10.1038/s41596-018-0098-2.
2) Check for an appropriate tutorial: https://github.com/opencobra/cobratoolbox/tree/master/tutorials

3) Make the question as detailed as possible to increase the probability of a rapid and helpful reply.

rxnConfidenceScores are 0 in Recon3D model

priyanka baloni