A problem about update The COBRA Toolbox
NA
Thomas Pfau
Hi NA,
I'd suggest to delete your current version and do a
reinstallation (i.e. create a new clone) according to the
installation instructions.
Best
Thomas
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NA
在 2018年4月26日星期四 UTC+8下午1:28:05，Thomas Pfau写道：
Hi NA,
I'd suggest to delete your current version and do a reinstallation (i.e. create a new clone) according to the installation instructions.
Best
Thomas
On 2018-04-25 14:54, NA wrote:
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hi，--A problem about update The COBRA Toolbox ：“There are 5883 new commit(s) on <master> and 0 new commit(s) on <develop> [f0b7a8 @ master]You can update The COBRA Toolbox by running updateCobraToolbox() (from within MATLAB).”But when i runn ‘updateCobraToolbox() ‘，’it always happen some errors，what should i do？
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Liuyw
在 2018年4月25日星期三 UTC+8下午8:54:27，NA写道：
Thomas Pfau
Hi NA,
Given the message you supplied (master behind by 5883 new
commits), I'm pretty sure, that you did not do a full reinstall of
the toolbox.
The only other method I, besides a proper reinstall, would be to
use git commands. In a console switch to your cobra toolbox
directory.
In that directory do:
git remote -v
You should see something like:
origin g...@github.com:tpfau/cobratoolbox.git (fetch)
origin g...@github.com:tpfau/cobratoolbox.git (push)
upstream https://github.com/opencobra/cobratoolbox.git (fetch)
upstream https://github.com/opencobra/cobratoolbox.git (push)
or:
origin https://github.com/opencobra/cobratoolbox.git (fetch)
origin https://github.com/opencobra/cobratoolbox.git (push)
Run:
git fetch origin
git checkout master
git pull
if this succeeds, try updateCobraToolbox again from matlab. If it does not, I would really suggest to completely delete the folder you installed your toolbox in and reinstall it according to the installation instructions.
Best
Thomas
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Thomas Pfau
Hi Liuyw,
You seem to have modified files in the toolbox. If you want to
keep using those changes I would suggest to have a look at the
DevTools ( https://github.com/opencobra/MATLAB.devTools ).
If you don't want to keep those changes, you could go to a
console/terminal, navigate to your cobratoolbox folder and do the
following:
To determine, which files you modified run:
$git status
If you don't want to keep those changes, you can run:
$git stash
However this will remove all changes you made to your local copy, and they cannot be retrieved after the command, so be careful and backup any modified fies for which you want to keep the modifications.
Best
Thomas
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hi，
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NA NA
Thank you for your patience. I tried both methods and found that
the best method is to reinstall my cobratoolbox. It is the most
convenient way to solve my problems smoothly. Thank you again for your
help.
yours
liuyw