Visualization tools similar to paint4Net

Edwin Baez

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Feb 26, 2024, 1:16:44 AMFeb 26

to cobra pie

Hi guys, Is there a similar tool to paint4net to visualize GEMs?

Fred C

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Feb 28, 2024, 4:05:33 PMFeb 28

to cobra pie

https://escher.github.io/#/

Edwin Baez

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Feb 29, 2024, 2:05:11 PMFeb 29

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Yes i saw Escher but looks like the project was abandoned time ago ,Is there other alternative ?, Which tool are using to vizualize GEM's?

dtusso

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Feb 29, 2024, 2:17:01 PMFeb 29

to cobra pie

https://cave.biodesign.ac.cn/

Björn Johansson

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Mar 1, 2024, 12:59:04 PMMar 1

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Can CAVE visualize models solved locally with cobrapy?

Edwin Baez

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Mar 6, 2024, 12:49:37 AMMar 6

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Looks like you could uoload your own models

Moritz Beber

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Mar 9, 2024, 4:11:47 PMMar 9

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Have a look at these packages linked from our homepage https://opencobra.github.io/cobrapy/tags/visualization/

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Te C

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Mar 14, 2024, 9:43:27 AMMar 14

to Moritz Beber, cobr...@googlegroups.com

This could also be interesting: https://github.com/biosustain/shu

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