This is great news!
Do not worry about the appearance of the windows. In fact, the
cmpbidsappmanager relies on PySide2 library (Free Qt5) for graphical
backend and the appearance could change depending on the OS (for
instance between Linux and Mac or between even two different versions of
Linux) but the functionalities are the same. Also, the screenshots were taken from a previous version of CMP3 and the main title window shows a different version tag.
The CMTK.org domain is still pointing the documentation of the previous
version of CMP which was using its own data organization, but which is
This is problem we will fix very soon by:
- making sure the CMTK.org website will point to the documentation of the new CMP v3
- putting a notification in the previous repositories of CMP1 and CMP2 and a redirection to the new CMP3
I will add a section in to give an example.
the sample dataset, we do not provide a sample open dataset yet.
However, CMP3 takes any dataset organized following the BIDS standard
which should have at least T1w images, and could have DWI and/or
resting-state fMRI images. See examples of BIDS organized datasets @ https://github.com/bids-standard/bids-examples
For instance, a BIDS dataset with T1w and DWI images should adopt the following organization, naming, and file formats:
- Nifti images should be converted from DICOMs using the dcm2niix converter (https://www.nitrc.org/projects/mricrogl
which will generate an extra *.json file (mandatory in BIDS) which
summarizes acquisition metadata that are lost otherwise lost during
CMP3 will accept only valid BIDS datasets. So once you have created a
new BIDS dataset or just added new subjects, please validate your
dataset with the BIDS validator () beforehand which can help you to
identify and fix possible errors before being run throughout the CMP3
Hope this helps. Let me know.