Hi all,
This means that you would need to have Docker installed on your computer and a dataset organized following the BIDS standard (
https://bids.neuroimaging.io) which includes a T1w image.
Data already processed with FreeSurfer?
If you have your data already processed with FreeSurfer, you can move/copy each Freesurfer subject folder (the folder which contains the mri/, label/, surf/, ...) into <bids_dataset_root_directory>/derivatives/freesurfer/sub-<participant_label> such that the multiscalebrainparcellator will not perform at run Freesurfer recon-all again.
Best,
Sebastien