cmtk-users

Dear experts , For a project, I am trying to add laussane2018 parcellation to the mrtrix software

Hi, just noticed two small typos in this page: https://connectome-mapper-3.readthedocs.io/en/latest/

Dear FarNaf and Pascal, I have good news! I managed to get access to a windows machine today and to

Hi Isotta, I had to leave for family reasons and I am now back to work. So it seems it is really

Hi, This corresponds to the number of voxels of each ROI after applying the transformation from T1w

Hi Isotta! The quality inspector is indeed generating the command to open the outputs with

Good morning, the issue above has been solved by disabling the option 'map-mri'. The .dwi

Hi Sebastien, the problem was the Freesurfer version: I had the 7 installed. Now that I have

Hi Sebastien, I am using the Connectome Mapper v3.0.0-RC4. I tried to import the BIDSLayout with the

Hi Sebastien Thank you very much. This solved the problem! Best, Ellen Von: "cmtk-users@

Hi Yuta! It seems to have indeed worked! You can see that these 2 attributes are well set at the

Hi Pavan! Could you use singularity? If yes, you could run connectomemapper3 which provides a

Dear cmtk-experts, I used the Lausanne 2008 atlas in my DTI preprocessing. Now, I would like to

Hey there, I'm using the connectome mapper 3 gui. I am getting an error that my dataset is not a

Also please could you open new topics in the future, this would help others to access support

You're welcome! Sebastien On Wed, Jan 13, 2021 at 4:30 AM Octavian Lie <octavian.lie@gmail.com

I forgot to mention, for scaled 3:5 there are also a different number of nodes. I've summarised

Hello, sorry for the many questions, but I also have an issue when installing the Connectome Mapper -

Hi Sebastien, hi Pavan, thank you for your help. Unfortunately, changing the location of the licencse

Hi Mary, I do not know which version of CMP you are trying to install but it seems you are not trying

Hi, I have found the Laussann 2008 atlas '.annot' file and visualize the ROIs in freeview.

Hi, I want to ask a question about the extraction of Lausanne 2008 ROIs for Freesurfer. So is it

Hi Sebastien, Thanks for your instructions and now I can run the app. But when I set everything up,

Great!! Thanks also for your feedback :) Best, Sebastien On Fri, Jan 17, 2020 at 9:59 PM Ariana

Thanks! It worked with the following: docker run -it --rm \ -v $parent_dir:/bids_dir \ -v $out_dir:/

Thank you Sebastien! This is very helpful. On Tuesday, January 14, 2020 at 3:48:51 AM UTC-5,

Hi Raul, This is strange. Does the location "~/Desktop/connectome/cmpbidsappmanager"

Hi, Please could you give more details about the error ? Also which version of Connectome Mapper are

Hi Ariana, I am sorry to tell you but connectomemapper 1 hosted @ https://github.com/LTS5/cmp, and

Hi Aswin, Actually, the readthedocs documentation was generated a long time ago when CMP3 code was