cmtk-users

1–30 of 323

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FarNaf, … Sebastien Tourbier5

Aug 17

error "RuntimeError: No pyface.toolkits plugin could be loaded for qt" when calling GUI

Dear FarNaf and Pascal, I have good news! I managed to get access to a windows machine today and to

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error "RuntimeError: No pyface.toolkits plugin could be loaded for qt" when calling GUI

Dear FarNaf and Pascal, I have good news! I managed to get access to a windows machine today and to

Aug 17

Isotta Rigoni, Sebastien Tourbier6

Jun 7

problems running SHORE on DSI data

Hi Isotta, I had to leave for family reasons and I am now back to work. So it seems it is really

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problems running SHORE on DSI data

Hi Isotta, I had to leave for family reasons and I am now back to work. So it seems it is really

Jun 7

小明, Sebastien Tourbier7

Jun 7

outputs question of volume

Hi, This corresponds to the number of voxels of each ROI after applying the transformation from T1w

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outputs question of volume

Hi, This corresponds to the number of voxels of each ROI after applying the transformation from T1w

Jun 7

Isotta Rigoni, Sebastien Tourbier2

Apr 30

failed visualisation of diffusion outputs

Hi Isotta! The quality inspector is indeed generating the command to open the outputs with

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failed visualisation of diffusion outputs

Hi Isotta! The quality inspector is indeed generating the command to open the outputs with

Apr 30

Apr 30

cmp stuck at MAP-MRI but no error message given

Good morning, the issue above has been solved by disabling the option 'map-mri'. The .dwi

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cmp stuck at MAP-MRI but no error message given

Good morning, the issue above has been solved by disabling the option 'map-mri'. The .dwi

Apr 30

Isotta Rigoni, Sebastien Tourbier3

Apr 16

failed visualisation of segmentation stage

Hi Sebastien, the problem was the Freesurfer version: I had the 7 installed. Now that I have

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failed visualisation of segmentation stage

Hi Sebastien, the problem was the Freesurfer version: I had the 7 installed. Now that I have

Apr 16

Isotta Rigoni, Sebastien Tourbier3

Apr 10

invalid BIDS dataset

Hi Sebastien, I am using the Connectome Mapper v3.0.0-RC4. I tried to import the BIDSLayout with the

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invalid BIDS dataset

Hi Sebastien, I am using the Connectome Mapper v3.0.0-RC4. I tried to import the BIDSLayout with the

Apr 10

Ellen van Maren, Sebastien Tourbier3

Mar 26

multiscalebrainparcellator Error in freesurfer

Hi Sebastien Thank you very much. This solved the problem! Best, Ellen Von: "cmtk-users@

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multiscalebrainparcellator Error in freesurfer

Hi Sebastien Thank you very much. This solved the problem! Best, Ellen Von: "cmtk-users@

Mar 26

Yuta Katsumi, Sebastien Tourbier4

Mar 3

Unable to specify existing FreeSurfer directories for multiple subjects in ref_anatomical_config.ini

Hi Yuta! It seems to have indeed worked! You can see that these 2 attributes are well set at the

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Unable to specify existing FreeSurfer directories for multiple subjects in ref_anatomical_config.ini

Hi Yuta! It seems to have indeed worked! You can see that these 2 attributes are well set at the

Mar 3

pavanc...@gmail.com, Sebastien Tourbier2

Mar 1

multi scale brain parcellator install without docker

Hi Pavan! Could you use singularity? If yes, you could run connectomemapper3 which provides a

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multi scale brain parcellator install without docker

Hi Pavan! Could you use singularity? If yes, you could run connectomemapper3 which provides a

Mar 1

Feb 5

Lausanne 2008 nifti

Dear cmtk-experts, I used the Lausanne 2008 atlas in my DTI preprocessing. Now, I would like to

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Lausanne 2008 nifti

Dear cmtk-experts, I used the Lausanne 2008 atlas in my DTI preprocessing. Now, I would like to

Feb 5

pavanc...@gmail.com

Jan 25

bids directory not working

Hey there, I'm using the connectome mapper 3 gui. I am getting an error that my dataset is not a

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bids directory not working

Hey there, I'm using the connectome mapper 3 gui. I am getting an error that my dataset is not a

Jan 25

小明, Sebastien Tourbier15

Jan 14

Please， Why my GUI lose something

Also please could you open new topics in the future, this would help others to access support

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Please， Why my GUI lose something

Also please could you open new topics in the future, this would help others to access support

Jan 14

Octavian Lie, Sebastien Tourbier10

Jan 13

Connectome viewer question

You're welcome! Sebastien On Wed, Jan 13, 2021 at 4:30 AM Octavian Lie <octavian.lie@gmail.com

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Connectome viewer question

You're welcome! Sebastien On Wed, Jan 13, 2021 at 4:30 AM Octavian Lie <octavian.lie@gmail.com

Jan 13

Pavan Chaggar, Sebastien Tourbier4

5/12/20

Multiscale parcellation MNI reference

I forgot to mention, for scaled 3:5 there are also a different number of nodes. I've summarised

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Multiscale parcellation MNI reference

I forgot to mention, for scaled 3:5 there are also a different number of nodes. I've summarised

5/12/20

David Nothdurfter

5/8/20

Problems while setting up the conda environment/ cannot find libffi

Hello, sorry for the many questions, but I also have an issue when installing the Connectome Mapper -

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Problems while setting up the conda environment/ cannot find libffi

Hello, sorry for the many questions, but I also have an issue when installing the Connectome Mapper -

5/8/20

David Nothdurfter, … Sebastien Tourbier9

5/8/20

Multi-Scale Brain Parcellator

Hi Sebastien, hi Pavan, thank you for your help. Unfortunately, changing the location of the licencse

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Multi-Scale Brain Parcellator

Hi Sebastien, hi Pavan, thank you for your help. Unfortunately, changing the location of the licencse

5/8/20

maryam tayebi, Sebastien Tourbier2

3/24/20

Install cmtk on Mac, version of libraries

Hi Mary, I do not know which version of CMP you are trying to install but it seems you are not trying

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Install cmtk on Mac, version of libraries

Hi Mary, I do not know which version of CMP you are trying to install but it seems you are not trying

3/24/20

3/18/20

Question about subcortical areas in Laussann atlas

Hi, I have found the Laussann 2008 atlas '.annot' file and visualize the ROIs in freeview.

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Question about subcortical areas in Laussann atlas

Hi, I have found the Laussann 2008 atlas '.annot' file and visualize the ROIs in freeview.

3/18/20

3/11/20

How to visualize brian activity in Lausanne 2008

Hi, I want to ask a question about the extraction of Lausanne 2008 ROIs for Freesurfer. So is it

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How to visualize brian activity in Lausanne 2008

Hi, I want to ask a question about the extraction of Lausanne 2008 ROIs for Freesurfer. So is it

3/11/20

Feng Fang, Sebastien Tourbier6

3/11/20

Which version of Python should we use to install the CMTK toolbox?

Hi Sebastien, Thanks for your instructions and now I can run the app. But when I set everything up,

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Which version of Python should we use to install the CMTK toolbox?

Hi Sebastien, Thanks for your instructions and now I can run the app. But when I set everything up,

3/11/20

Ariana Familiar, Sebastien Tourbier8

1/20/20

multiscalebrainparcellator Error during parcellation

Great!! Thanks also for your feedback :) Best, Sebastien On Fri, Jan 17, 2020 at 9:59 PM Ariana

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multiscalebrainparcellator Error during parcellation

Great!! Thanks also for your feedback :) Best, Sebastien On Fri, Jan 17, 2020 at 9:59 PM Ariana

1/20/20

Sebastien Tourbier, Ariana Familiar2

1/15/20

Re: multiscalebrainparcellator error locating freesurfer license

Thanks! It worked with the following: docker run -it --rm \ -v $parent_dir:/bids_dir \ -v $out_dir:/

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Re: multiscalebrainparcellator error locating freesurfer license

Thanks! It worked with the following: docker run -it --rm \ -v $parent_dir:/bids_dir \ -v $out_dir:/

1/15/20

Katelyn Arnemann, … Ariana Familiar5

1/14/20

Extract Lausanne 2008 ROIs outside Connectome Mapper pipeline?

Thank you Sebastien! This is very helpful. On Tuesday, January 14, 2020 at 3:48:51 AM UTC-5,

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Extract Lausanne 2008 ROIs outside Connectome Mapper pipeline?

Thank you Sebastien! This is very helpful. On Tuesday, January 14, 2020 at 3:48:51 AM UTC-5,

1/14/20

raul perez moraga, Sebastien Tourbier2

1/14/20

Error in the installation of connectome-mapper 3

Hi Raul, This is strange. Does the location "~/Desktop/connectome/cmpbidsappmanager"

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Error in the installation of connectome-mapper 3

Hi Raul, This is strange. Does the location "~/Desktop/connectome/cmpbidsappmanager"

1/14/20

cmpuser, Sebastien Tourbier2

1/14/20

Connectomemapper3 installation

Hi, Please could you give more details about the error ? Also which version of Connectome Mapper are

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Connectomemapper3 installation

Hi, Please could you give more details about the error ? Also which version of Connectome Mapper are

1/14/20

Ariana Familiar, Sebastien Tourbier2

1/14/20

error running connectomemapper after install

Hi Ariana, I am sorry to tell you but connectomemapper 1 hosted @ https://github.com/LTS5/cmp, and

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error running connectomemapper after install

Hi Ariana, I am sorry to tell you but connectomemapper 1 hosted @ https://github.com/LTS5/cmp, and

1/14/20

Aswin Chari, Sebastien Tourbier3

10/17/19

GUI Install Error "Could not read from remote repository"

Hi Aswin, Actually, the readthedocs documentation was generated a long time ago when CMP3 code was

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GUI Install Error "Could not read from remote repository"

Hi Aswin, Actually, the readthedocs documentation was generated a long time ago when CMP3 code was

10/17/19

Chris McNorgan, IStevens3

6/27/18

Installation problem related to enthought.traits.api on Ubuntu 14.04

On Ubuntu 16.04 I found changing the import in the file to traits.api worked. Imports like:

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Installation problem related to enthought.traits.api on Ubuntu 14.04

On Ubuntu 16.04 I found changing the import in the file to traits.api worked. Imports like:

6/27/18

Marc Ramos, Liang Cao2

4/13/18

Tracks displaced

I have the same problem. Have you solved it? On Wednesday, June 4, 2014 at 10:14:17 PM UTC+8, Marc

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Tracks displaced

I have the same problem. Have you solved it? On Wednesday, June 4, 2014 at 10:14:17 PM UTC+8, Marc

4/13/18

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