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Giulia De Leo
Feb 6
Stroke patient
Hi, Could you tell me how to process a stroke patient using the GUI? I wish there were no connections
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Stroke patient
Hi, Could you tell me how to process a stroke patient using the GUI? I wish there were no connections
Feb 6
Dominika Slušná
11/23/22
Multi-Scale Brain Parcellator - how long does it run?
Hi all, Does anybody have an estimate about how long does the Multi-Scale Brain Parcellator take to
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Multi-Scale Brain Parcellator - how long does it run?
Hi all, Does anybody have an estimate about how long does the Multi-Scale Brain Parcellator take to
11/23/22
Alexandre Cionca
,
Sebastien Tourbier
3
10/26/22
DWI processing only - existing anat derivatives
Dear Seb, Many thanks for your answer - As you suggest, it would be easier to run the anatomical and
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DWI processing only - existing anat derivatives
Dear Seb, Many thanks for your answer - As you suggest, it would be easier to run the anatomical and
10/26/22
milad najafzadeh
,
Sebastien Tourbier
3
7/9/22
Probelm in using anatomically constraint tractography
Dear Sebastian Thanks to your fast response. Surly. I create a new topic in that link and provide all
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Probelm in using anatomically constraint tractography
Dear Sebastian Thanks to your fast response. Surly. I create a new topic in that link and provide all
7/9/22
milad najafzadeh
,
Sebastien Tourbier
6
7/9/22
loading data using GUI
Dear Sebastien Many thanks for your detailed answers With kind regards, -Milad On Friday, July 8,
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loading data using GUI
Dear Sebastien Many thanks for your detailed answers With kind regards, -Milad On Friday, July 8,
7/9/22
Rory Piper
,
Sebastien Tourbier
2
6/27/22
Thalamus parcellation not combined
Hi Rory, It is hard say what is happening. It would be great if you could provide me with the
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Thalamus parcellation not combined
Hi Rory, It is hard say what is happening. It would be great if you could provide me with the
6/27/22
milad najafzadeh
,
Sebastien Tourbier
3
6/11/22
Adding laussane2018 atlas to the mrtrix
Dear Sebastien Many thanks to your helps. I have changed my pipeline to use cmp3. -Best regards -
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Adding laussane2018 atlas to the mrtrix
Dear Sebastien Many thanks to your helps. I have changed my pipeline to use cmp3. -Best regards -
6/11/22
Fatemeh Sadeghi
3/15/22
typo in Docs
Hi, just noticed two small typos in this page: https://connectome-mapper-3.readthedocs.io/en/latest/
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typo in Docs
Hi, just noticed two small typos in this page: https://connectome-mapper-3.readthedocs.io/en/latest/
3/15/22
FarNaf
, …
Sebastien Tourbier
5
8/17/21
error "RuntimeError: No pyface.toolkits plugin could be loaded for qt" when calling GUI
Dear FarNaf and Pascal, I have good news! I managed to get access to a windows machine today and to
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error "RuntimeError: No pyface.toolkits plugin could be loaded for qt" when calling GUI
Dear FarNaf and Pascal, I have good news! I managed to get access to a windows machine today and to
8/17/21
Isotta Rigoni
,
Sebastien Tourbier
6
6/7/21
problems running SHORE on DSI data
Hi Isotta, I had to leave for family reasons and I am now back to work. So it seems it is really
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problems running SHORE on DSI data
Hi Isotta, I had to leave for family reasons and I am now back to work. So it seems it is really
6/7/21
小明
,
Sebastien Tourbier
7
6/7/21
outputs question of volume
Hi, This corresponds to the number of voxels of each ROI after applying the transformation from T1w
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outputs question of volume
Hi, This corresponds to the number of voxels of each ROI after applying the transformation from T1w
6/7/21
Isotta Rigoni
,
Sebastien Tourbier
2
4/30/21
failed visualisation of diffusion outputs
Hi Isotta! The quality inspector is indeed generating the command to open the outputs with
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failed visualisation of diffusion outputs
Hi Isotta! The quality inspector is indeed generating the command to open the outputs with
4/30/21
Isotta Rigoni
3
4/30/21
cmp stuck at MAP-MRI but no error message given
Good morning, the issue above has been solved by disabling the option 'map-mri'. The .dwi
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cmp stuck at MAP-MRI but no error message given
Good morning, the issue above has been solved by disabling the option 'map-mri'. The .dwi
4/30/21
Isotta Rigoni
,
Sebastien Tourbier
3
4/16/21
failed visualisation of segmentation stage
Hi Sebastien, the problem was the Freesurfer version: I had the 7 installed. Now that I have
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failed visualisation of segmentation stage
Hi Sebastien, the problem was the Freesurfer version: I had the 7 installed. Now that I have
4/16/21
Isotta Rigoni
,
Sebastien Tourbier
3
4/10/21
invalid BIDS dataset
Hi Sebastien, I am using the Connectome Mapper v3.0.0-RC4. I tried to import the BIDSLayout with the
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invalid BIDS dataset
Hi Sebastien, I am using the Connectome Mapper v3.0.0-RC4. I tried to import the BIDSLayout with the
4/10/21
Ellen van Maren
,
Sebastien Tourbier
3
3/26/21
multiscalebrainparcellator Error in freesurfer
Hi Sebastien Thank you very much. This solved the problem! Best, Ellen Von: "cmtk-users@
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multiscalebrainparcellator Error in freesurfer
Hi Sebastien Thank you very much. This solved the problem! Best, Ellen Von: "cmtk-users@
3/26/21
Yuta Katsumi
,
Sebastien Tourbier
4
3/3/21
Unable to specify existing FreeSurfer directories for multiple subjects in ref_anatomical_config.ini
Hi Yuta! It seems to have indeed worked! You can see that these 2 attributes are well set at the
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Unable to specify existing FreeSurfer directories for multiple subjects in ref_anatomical_config.ini
Hi Yuta! It seems to have indeed worked! You can see that these 2 attributes are well set at the
3/3/21
pavanc...@gmail.com
,
Sebastien Tourbier
2
3/1/21
multi scale brain parcellator install without docker
Hi Pavan! Could you use singularity? If yes, you could run connectomemapper3 which provides a
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multi scale brain parcellator install without docker
Hi Pavan! Could you use singularity? If yes, you could run connectomemapper3 which provides a
3/1/21
Tim
2/5/21
Lausanne 2008 nifti
Dear cmtk-experts, I used the Lausanne 2008 atlas in my DTI preprocessing. Now, I would like to
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Lausanne 2008 nifti
Dear cmtk-experts, I used the Lausanne 2008 atlas in my DTI preprocessing. Now, I would like to
2/5/21
pavanc...@gmail.com
1/25/21
bids directory not working
Hey there, I'm using the connectome mapper 3 gui. I am getting an error that my dataset is not a
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bids directory not working
Hey there, I'm using the connectome mapper 3 gui. I am getting an error that my dataset is not a
1/25/21
小明
,
Sebastien Tourbier
15
1/14/21
Please, Why my GUI lose something
Also please could you open new topics in the future, this would help others to access support
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Please, Why my GUI lose something
Also please could you open new topics in the future, this would help others to access support
1/14/21
Octavian Lie
,
Sebastien Tourbier
10
1/13/21
Connectome viewer question
You're welcome! Sebastien On Wed, Jan 13, 2021 at 4:30 AM Octavian Lie <octavi...@gmail.com
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Connectome viewer question
You're welcome! Sebastien On Wed, Jan 13, 2021 at 4:30 AM Octavian Lie <octavi...@gmail.com
1/13/21
Pavan Chaggar
,
Sebastien Tourbier
4
5/12/20
Multiscale parcellation MNI reference
I forgot to mention, for scaled 3:5 there are also a different number of nodes. I've summarised
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Multiscale parcellation MNI reference
I forgot to mention, for scaled 3:5 there are also a different number of nodes. I've summarised
5/12/20
David Nothdurfter
5/8/20
Problems while setting up the conda environment/ cannot find libffi
Hello, sorry for the many questions, but I also have an issue when installing the Connectome Mapper -
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Problems while setting up the conda environment/ cannot find libffi
Hello, sorry for the many questions, but I also have an issue when installing the Connectome Mapper -
5/8/20
David Nothdurfter
, …
Sebastien Tourbier
9
5/8/20
Multi-Scale Brain Parcellator
Hi Sebastien, hi Pavan, thank you for your help. Unfortunately, changing the location of the licencse
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Multi-Scale Brain Parcellator
Hi Sebastien, hi Pavan, thank you for your help. Unfortunately, changing the location of the licencse
5/8/20
maryam tayebi
,
Sebastien Tourbier
2
3/24/20
Install cmtk on Mac, version of libraries
Hi Mary, I do not know which version of CMP you are trying to install but it seems you are not trying
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Install cmtk on Mac, version of libraries
Hi Mary, I do not know which version of CMP you are trying to install but it seems you are not trying
3/24/20
Feng Fang
3/18/20
Question about subcortical areas in Laussann atlas
Hi, I have found the Laussann 2008 atlas '.annot' file and visualize the ROIs in freeview.
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Question about subcortical areas in Laussann atlas
Hi, I have found the Laussann 2008 atlas '.annot' file and visualize the ROIs in freeview.
3/18/20
Feng Fang
3/11/20
How to visualize brian activity in Lausanne 2008
Hi, I want to ask a question about the extraction of Lausanne 2008 ROIs for Freesurfer. So is it
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How to visualize brian activity in Lausanne 2008
Hi, I want to ask a question about the extraction of Lausanne 2008 ROIs for Freesurfer. So is it
3/11/20
Feng Fang
,
Sebastien Tourbier
6
3/11/20
Which version of Python should we use to install the CMTK toolbox?
Hi Sebastien, Thanks for your instructions and now I can run the app. But when I set everything up,
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Which version of Python should we use to install the CMTK toolbox?
Hi Sebastien, Thanks for your instructions and now I can run the app. But when I set everything up,
3/11/20
Ariana Familiar
,
Sebastien Tourbier
8
1/20/20
multiscalebrainparcellator Error during parcellation
Great!! Thanks also for your feedback :) Best, Sebastien On Fri, Jan 17, 2020 at 9:59 PM Ariana
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multiscalebrainparcellator Error during parcellation
Great!! Thanks also for your feedback :) Best, Sebastien On Fri, Jan 17, 2020 at 9:59 PM Ariana
1/20/20